Ignore previous email, I found the error, it was not a Galaxy problem Thanks Shaun Quoting SHAUN WEBB <swebb1@staffmail.ed.ac.uk> on Mon, 25 Jul 2011 11:21:43 +0100:

Hi all,

I'm getting the following error running a custom tool. I'm not really sure where the problem is coming from, it doesn't happen every time I run the tool. Can anyone point me in the right direction?

Thanks Shaun

Traceback (most recent call last): File "/storage/home/galaxy/test/galaxy-dist/lib/galaxy/jobs/runners/local.py", line 58, in run_job job_wrapper.prepare() File "/storage/home/galaxy/test/galaxy-dist/lib/galaxy/jobs/__init__.py", line 372, in prepare self.command_line = self.tool.build_command_line( param_dict ) File "/storage/home/galaxy/test/galaxy-dist/lib/galaxy/tools/__init__.py", line 1585, in build_command_line command_line = fill_template( self.command, context=param_dict ) File "/storage/home/galaxy/test/galaxy-dist/lib/galaxy/util/template.py", line 9, in fill_template return str( Template( source=template_text, searchList=[context] ) ) File "/storage/home/galaxy/test/galaxy-dist/eggs/Cheetah-2.2.2-py2.6-linux-x86_64-ucs4.egg/Cheetah/Template.py", line 1004, in __str__ return getattr(self, mainMethName)() File "cheetah_DynamicallyCompiledCheetahTemplate_1311417753_92_55587.py", line 88, in respond NotFound: cannot find 'checktype'

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-- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.