Hi Katherine, Are you asking about the XML files which described Galaxy Tools by listing all the options to show the user, any help text to show the user, and instructions for how to turn the options picked into a command line to be executed: https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax Peter On Fri, Jul 22, 2016 at 12:09 PM, Katherine Beaulieu <katherine.beaulieu014@gmail.com> wrote:

Dear all, I am looking for the files/functions that get called from the point where you click on the tool name to the point where you get an html version of your tool on the screen. Could someone indicate what this path looks like? I would be really appreciative! Thanks, Katherine

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