Test Tool Shed uploads broken
Hi Greg & Dave, I just tried to upload an update to my Blast2GO wrapper on the Test Tool Shed, http://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go This gave the following error, also note typo sucessfully [sic] -> successfully. Internal Server Error Galaxy was unable to sucessfully complete your request URL: http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=e4de88c47079d9... Module galaxy.web.framework.middleware.error:149 in __call__
app_iter = self.application(environ, sr_checker) Module paste.debug.prints:106 in __call__ environ, self.app) Module paste.wsgilib:543 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:84 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:633 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:132 in __call__ return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:190 in handle_request body = method( trans, **kwargs ) Module galaxy.web.framework:98 in decorator return func( self, trans, *args, **kwargs ) Module galaxy.webapps.tool_shed.controllers.upload:122 in upload self.upload_tar( trans, repository, tar, uploaded_file, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert ) Module galaxy.webapps.tool_shed.controllers.upload:326 in upload_tar undesirable_files_removed ) Module tool_shed.util.commit_util:116 in handle_directory_changes for undesirable_dir in undesirable_dirs: NameError: global name 'undesirable_dirs' is not defined
Peter
Hi Peter, Thanks for letting me know and sorry about the inconvenience. I've fixed this in 9763:9c06caa86e2a which is now on the test tool shed. Greg Von Kuster On May 17, 2013, at 5:08 AM, Peter Cock wrote:
Hi Greg & Dave,
I just tried to upload an update to my Blast2GO wrapper on the Test Tool Shed, http://testtoolshed.g2.bx.psu.edu/view/peterjc/blast2go
This gave the following error, also note typo sucessfully [sic] -> successfully.
Internal Server Error Galaxy was unable to sucessfully complete your request
URL: http://testtoolshed.g2.bx.psu.edu/upload/upload?repository_id=e4de88c47079d9... Module galaxy.web.framework.middleware.error:149 in __call__
app_iter = self.application(environ, sr_checker) Module paste.debug.prints:106 in __call__ environ, self.app) Module paste.wsgilib:543 in intercept_output app_iter = application(environ, replacement_start_response) Module paste.recursive:84 in __call__ return self.application(environ, start_response) Module paste.httpexceptions:633 in __call__ return self.application(environ, start_response) Module galaxy.web.framework.base:132 in __call__ return self.handle_request( environ, start_response ) Module galaxy.web.framework.base:190 in handle_request body = method( trans, **kwargs ) Module galaxy.web.framework:98 in decorator return func( self, trans, *args, **kwargs ) Module galaxy.webapps.tool_shed.controllers.upload:122 in upload self.upload_tar( trans, repository, tar, uploaded_file, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert ) Module galaxy.webapps.tool_shed.controllers.upload:326 in upload_tar undesirable_files_removed ) Module tool_shed.util.commit_util:116 in handle_directory_changes for undesirable_dir in undesirable_dirs: NameError: global name 'undesirable_dirs' is not defined
Peter
participants (2)
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Greg Von Kuster
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Peter Cock