Hi,
I am using a tool that interacts with Web services via Galaxy. Run on its own in the Galaxy GUI, it works fine. But when we run it in a workflow, with other tools it sometimes runs correctly , sometimes gives the following error:
OperationalError: (OperationalError) database is locked u'UPDATE job SET update_time=?, command_line=? WHERE job.id = ?' ['2010-07-12 14:10:18.398960', 'python ${installationDirectory}/tools/${............ .....................................................
I was wondering if Galaxy has some timeouts implemented in their workflows because of which if the first step takes a while the second step of the workflow is executed simultaneously? Or any other explanation for such behavior.
I would really appreciate a reply as soon as possible.
Thanks.
Regards, Sumedha
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