"use_heartbeat = True" is set. No heartbeat log files are
generated after restarting Galaxy service and running a queue job.
I'm not sure how this can occur. They should be created in Galaxy's
root directory since this is the working directory when Galaxy runs.
On Thu, 29 Apr 2010, Nate Coraor wrote:
Date: Thu, 29 Apr 2010 16:03:59 +0100
From: Nate Coraor <nate(a)bx.psu.edu>
To: Stephen Taylor <stephen.taylor(a)imm.ox.ac.uk>
Cc: "galaxy-dev(a)bx.psu.edu" <galaxy-dev(a)bx.psu.edu>,
Subject: Re: [galaxy-dev] Job Control in Galaxy
Steve Taylor wrote:
> Yes it says:
> galaxy.jobs.runners.sge DEBUG 2010-04-29 15:33:33,133 (136/1221) state
> change: job finished normally
> but in Galaxy it still is showing it as running.
After this you should also see 'job 136 ended'. This means that Galaxy
has finished all post-processing.
If this never happens, please try enabling this option:
use_heartbeat = True
This will create two files:
Watching the latter will show what the threads are up to when this is
happening. I suspect it's setting metadata, but this should tell us for