Output from Barcode splitter
Hi, I am trying to use the Barcode splitter tool as part of a workflow, I am not happy with the html output produce by this tool and would like to have access to fasta files. Any suggestions on how I can modify the tool so that it produces fasta outputs that would appear in the workflow ? Thanks Philippe
Hello Philippe, I won't lie to you, I don't what these barcodes are or what this tool actually does. However I had a similar request internally a while ago and at that time I hacked up a new barcode splitter tool that just takes in one barcode and produces a fixed number of outputs that can be used in workflows, I was told that it was working and useful at the time. I have attached the tool and wrapper to this e-mail in case they are likewise useful to you. -John ------------------------------------------------ John Chilton Senior Software Developer University of Minnesota Supercomputing Institute Office: 612-625-0917 Cell: 612-226-9223 Bitbucket: https://bitbucket.org/jmchilton Github: https://github.com/jmchilton Web: http://jmchilton.net On Sun, Oct 21, 2012 at 6:14 PM, Philipe Moncuquet <philippe.mcqt@gmail.com> wrote:
Hi,
I am trying to use the Barcode splitter tool as part of a workflow, I am not happy with the html output produce by this tool and would like to have access to fasta files. Any suggestions on how I can modify the tool so that it produces fasta outputs that would appear in the workflow ? Thanks
Philippe
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (2)
-
John Chilton
-
Philipe Moncuquet