Hello Mohamed, Two years ago, we had exactly the same needs (actually, we still have) and took an internship to investigate and develop a solution to privatize blast databank through Galaxy. As many projects, we didn’t find enough time to finalize that. I have just push the different scripts we have if you want to test or just have a look: https://github.com/abims-sbr/galaxy-blastprivate <https://github.com/abims-sbr/galaxy-blastprivate> Cheers Gildas ----------------------------------------------------------------- Gildas Le Corguillé - Bioinformatician/Bioanalyste Plateform ABiMS (Analyses and Bioinformatics for Marine Science) http://abims.sb-roscoff.fr <http://abims.sb-roscoff.fr/> Member of the Workflow4Metabolomics project http://workflow4metabolomics.org <http://workflow4metabolomics.org/> Station Biologique de Roscoff - UPMC/CNRS - FR2424 Place Georges Teissier 29680 Roscoff FRANCE tel: +33 2 98 29 23 81 ------------------------------------------------------------------

Le 19 janv. 2017 à 14:53, Peter Cock <p.j.a.cock@googlemail.com> a écrit :

Hello Mohamed,

Right now this is not possible, and I can't think of any way to restrict access to system level BLAST databases listed in the blast*.loc files by user. However, since other Galaxy tools use *.loc files, someone else may have some ideas.

You might be able to try using a BLAST database in a shared data library (Galaxy has a role based permissions system you could use), but the user would first have to import the database into their current history.

I hope that helps,

Peter

On Thu, Jan 19, 2017 at 1:45 PM, Mohamed Kassam <k.mamoud@gmail.com> wrote:

...

Dear all,

I would like to know if it is possible to put permission on the macro.xml for ncbi-blast + database. For example if I want to show the db to one user and not to all.

Best reagards,

Mohamed

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Hello, I have also the same needs ! Would it be possible to enable Cheetah conditionnals within the <inputs> tag ? Something like this : #if ($__user_email__.endswith('biogemma.com')) <param name="refset" type="select" label="the query sequences blast formated database" help="if your genome of interest is not listed - contact Bioinfo team"> <options from_data_table="blastdb_private" /> </param> #else <param name="refsetp" type="select" label="the query sequences blast formated database" help="if your genome of interest is not listed - contact Bioinfo team"> <options from_data_table="blastdb_public" /> </param> #end if Fred De : galaxy-dev [mailto:galaxy-dev-bounces@lists.galaxyproject.org] De la part de Gildas Le Corguillé Envoyé : vendredi 20 janvier 2017 10:22 À : Peter Cock <p.j.a.cock@googlemail.com> Cc : Galaxy Dev List <galaxy-dev@lists.galaxyproject.org> Objet : Re: [galaxy-dev] Blast db permission Hello Mohamed, Two years ago, we had exactly the same needs (actually, we still have) and took an internship to investigate and develop a solution to privatize blast databank through Galaxy. As many projects, we didn’t find enough time to finalize that. I have just push the different scripts we have if you want to test or just have a look: https://github.com/abims-sbr/galaxy-blastprivate Cheers Gildas ----------------------------------------------------------------- Gildas Le Corguillé - Bioinformatician/Bioanalyste Plateform ABiMS (Analyses and Bioinformatics for Marine Science) http://abims.sb-roscoff.fr Member of the Workflow4Metabolomics project http://workflow4metabolomics.org<http://workflow4metabolomics.org/> Station Biologique de Roscoff - UPMC/CNRS - FR2424 Place Georges Teissier 29680 Roscoff FRANCE tel: +33 2 98 29 23 81 ------------------------------------------------------------------ Le 19 janv. 2017 à 14:53, Peter Cock <p.j.a.cock@googlemail.com<mailto:p.j.a.cock@googlemail.com>> a écrit : Hello Mohamed, Right now this is not possible, and I can't think of any way to restrict access to system level BLAST databases listed in the blast*.loc files by user. However, since other Galaxy tools use *.loc files, someone else may have some ideas. You might be able to try using a BLAST database in a shared data library (Galaxy has a role based permissions system you could use), but the user would first have to import the database into their current history. I hope that helps, Peter On Thu, Jan 19, 2017 at 1:45 PM, Mohamed Kassam <k.mamoud@gmail.com<mailto:k.mamoud@gmail.com>> wrote: Dear all, I would like to know if it is possible to put permission on the macro.xml for ncbi-blast + database. For example if I want to show the db to one user and not to all. Best reagards, Mohamed ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/