Liisa Koski wrote:

Hi, Yesterday I ran the cleanup_datasets.py scripts as follows..

Deleting Userless Histories python cleanup_datasets.py universe_wsgi.ini -d 10 -1

Purging Deleted Histories python cleanup_datasets.py universe_wsgi.ini -d 10 -2 -r

Purging Deleted Datasets python cleanup_datasets.py universe_wsgi.ini -d 10 -3 -r

Purging Library Folders python cleanup_datasets.py universe_wsgi.ini -d 10 -5 -r

Purging Libraries python cleanup_datasets.py universe_wsgi.ini -d 10 -4 -r

Deleting Datasets / Purging Dataset Instances python cleanup_datasets.py universe_wsgi.ini -d 10 -6 -r

This morning I noticed a number of workflows were either stuck at a certain step (ie..job running) or the step was grey (waiting in queue) but our cluster has free nodes. If I start a new workflow...it completes fine...just the 19 histories that were running yesterday are stuck. Did I do something wrong with the cleanup. Is there a way to restart these stuck histories without having to restart the entire workflow?

Hi Liisa, I don't think cleanup would've been related. If you have enable_job_recovery = True in your configuration, since you're using a cluster you can restart the Galaxy job runner process and it should resume those jobs and finish them. --nate

Thanks in advance, Liisa

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