Hi
I downloaded and extracted the .chain files for liftOver and edited the .loc file. After
restarting Galaxy I have the option to convert my files to the respective coordinates but
when running the job I get the same error for each.
"Traceback (most recent call last): File
"/steno-internal/projects/galaxy/galaxy-dist/tools/extract/liftOver_wrapper.py",
line 81, in raise Exception, 'Exception caught attempting conversion: ' + str( e )
Exception: Exception caught attempting conversion"
I also found this in the handler.log file:
"galaxy.tools DEBUG 2012-12-20 11:37:09,902 Error opening galaxy.json file: [Errno 2]
No such file or directory:
'/steno-internal/projects/galaxy/galaxy-dist/database/job_working_directory/000/98/galaxy.json'
"
Do you know how could this be sorted?
Thanks in advance,
Nikos
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