Hi, I would like to create a wrapper for a program. For that I would like to test it, but I just found how to create a tool in galaxy. I couldn't find anything about how to create a package as a dependency. Can someone give me some help here? Best, Alexander
Hi Alex, here are some informations: https://wiki.galaxyproject.org/ToolDependencyRecipes https://wiki.galaxyproject.org/ToolDependenciesTagSets https://wiki.galaxyproject.org/PackageRecipes https://wiki.galaxyproject.org/SimpleRepositoryDependencies But the best way probably is to learn from examples: https://github.com/galaxyproject/tools-iuc/tree/master/packages Feel free to ask if you have a concrete example, we will help you to get this in! Cheers, Bjoern Am 10.06.2015 um 00:10 schrieb Alexander Vowinkel:
Hi,
I would like to create a wrapper for a program. For that I would like to test it, but I just found how to create a tool in galaxy. I couldn't find anything about how to create a package as a dependency.
Can someone give me some help here?
Best, Alexander
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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Hi Björn, thank you for your fast answer! I already walked through these pages. Thus I understood the basics of a dependency-file. The problem is: I don't know how to load it into my local galaxy installation. The only way I can see is by uploading it to ToolShed. But I would like to avoid that while I'm still learning to create these things ;) Best, Alexander 2015-06-09 17:16 GMT-05:00 Björn Grüning <bjoern.gruening@gmail.com>:
Hi Alex,
here are some informations: https://wiki.galaxyproject.org/ToolDependencyRecipes https://wiki.galaxyproject.org/ToolDependenciesTagSets https://wiki.galaxyproject.org/PackageRecipes https://wiki.galaxyproject.org/SimpleRepositoryDependencies
But the best way probably is to learn from examples: https://github.com/galaxyproject/tools-iuc/tree/master/packages
Feel free to ask if you have a concrete example, we will help you to get this in!
Cheers, Bjoern
Am 10.06.2015 um 00:10 schrieb Alexander Vowinkel:
Hi,
I would like to create a wrapper for a program. For that I would like to test it, but I just found how to create a tool in galaxy. I couldn't find anything about how to create a package as a dependency.
Can someone give me some help here?
Best, Alexander
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi Alexander, You can either run a local toolshed https://wiki.galaxyproject.org/HostingALocalDevelopmentToolShed or you can use the Galaxy TestToolShed for this purpose https://testtoolshed.g2.bx.psu.edu/ Cheers, Eric 2015-06-09 18:12 GMT-05:00 Alexander Vowinkel <vowinkel.alexander@gmail.com> :
Hi Björn,
thank you for your fast answer!
I already walked through these pages. Thus I understood the basics of a dependency-file. The problem is: I don't know how to load it into my local galaxy installation.
The only way I can see is by uploading it to ToolShed. But I would like to avoid that while I'm still learning to create these things ;)
Best, Alexander
2015-06-09 17:16 GMT-05:00 Björn Grüning <bjoern.gruening@gmail.com>:
Hi Alex,
here are some informations: https://wiki.galaxyproject.org/ToolDependencyRecipes https://wiki.galaxyproject.org/ToolDependenciesTagSets https://wiki.galaxyproject.org/PackageRecipes https://wiki.galaxyproject.org/SimpleRepositoryDependencies
But the best way probably is to learn from examples: https://github.com/galaxyproject/tools-iuc/tree/master/packages
Feel free to ask if you have a concrete example, we will help you to get this in!
Cheers, Bjoern
Am 10.06.2015 um 00:10 schrieb Alexander Vowinkel:
Hi,
I would like to create a wrapper for a program. For that I would like to test it, but I just found how to create a tool in galaxy. I couldn't find anything about how to create a package as a dependency.
Can someone give me some help here?
Best, Alexander
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
-- Eric Rasche Programmer II Center for Phage Technology Rm 312A, BioBio Texas A&M University College Station, TX 77843 404-692-2048 esr@tamu.edu rasche.eric@yandex.ru
Hi Alex,
You can either run a local toolshed https://wiki.galaxyproject.org/HostingALocalDevelopmentToolShed or you can use the Galaxy TestToolShed for this purpose https://testtoolshed.g2.bx.psu.edu/
I can add to this a Docker powered Galaxy Tool Shed if you like :) Ciao, Bjoern
Cheers, Eric
2015-06-09 18:12 GMT-05:00 Alexander Vowinkel <vowinkel.alexander@gmail.com> :
Hi Björn,
thank you for your fast answer!
I already walked through these pages. Thus I understood the basics of a dependency-file. The problem is: I don't know how to load it into my local galaxy installation.
The only way I can see is by uploading it to ToolShed. But I would like to avoid that while I'm still learning to create these things ;)
Best, Alexander
2015-06-09 17:16 GMT-05:00 Björn Grüning <bjoern.gruening@gmail.com>:
Hi Alex,
here are some informations: https://wiki.galaxyproject.org/ToolDependencyRecipes https://wiki.galaxyproject.org/ToolDependenciesTagSets https://wiki.galaxyproject.org/PackageRecipes https://wiki.galaxyproject.org/SimpleRepositoryDependencies
But the best way probably is to learn from examples: https://github.com/galaxyproject/tools-iuc/tree/master/packages
Feel free to ask if you have a concrete example, we will help you to get this in!
Cheers, Bjoern
Am 10.06.2015 um 00:10 schrieb Alexander Vowinkel:
Hi,
I would like to create a wrapper for a program. For that I would like to test it, but I just found how to create a tool in galaxy. I couldn't find anything about how to create a package as a dependency.
Can someone give me some help here?
Best, Alexander
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (3)
-
Alexander Vowinkel -
Björn Grüning -
Eric Rasche