Hi Scott,
This isn't currently exposed through the API, but I'm working on
implementing it at
https://github.com/galaxyproject/galaxy/pull/2741, if
you'd like to test it.
-Dannon
On Thu, Aug 4, 2016 at 10:38 AM Ouellette, Scott <
Scott_Ouellette(a)hms.harvard.edu> wrote:
Hi all,
I have a use case where I need to programmatically download both the
*.bam* and it's index file to run IGV outside of Galaxy, but have not
found a straightforward way to do so.
It seems that Galaxy always generates this *.bai *file under the hood,
and I can download it manually by clicking the “save” icon on the dataset
in my history. Although, the application I am coding for relies on the
bioblend Python library.
---
In bioblend I see a field returned upon a
`DatasetClient(<galaxy_instance>).show_dataset(<dataset_id>)` but that is
as far as I've got:
"meta_files": [
{
"file_type": "bam_index"
}
],
Any help is appreciated!
Thanks,
Scott O.
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