Dear galaxy developers, I sent this originally to the galaxy-bugs list and was asked to forward this also to this list. What is the best way to report bugs? There is galaxy-bugs, galaxy-dev and also the issue tracker on galaxy. During startup of my galaxy 17.01 installation an error message pops up: galaxy.tools.toolbox.base ERROR 2017-03-14 11:15:17,605 Error reading tool from path: toolshed.g2.bx.psu.edu/repos/devteam/bwa/53646aaaafef/bwa/bw a.xml Traceback (most recent call last): File "/home/berntm/galaxy/lib/galaxy/tools/toolbox/base.py", line 560, in _load_tool_tag_set tool.tool_shed = tool_shed_repository.tool_shed AttributeError: 'NoneType' object has no attribute 'tool_shed' Seems that tool_shed_repository is still None at this point. This happens for some tools. galaxy.tools.toolbox.base ERROR 2017-03-14 11:15:17,764 Error reading tool from path: toolshed.g2.bx.psu.edu/repos/devteam/bwa/53646aaaafef/bwa/bw a-mem.xml Traceback (most recent call last): File "/home/berntm/galaxy/lib/galaxy/tools/toolbox/base.py", line 560, in _load_tool_tag_set tool.tool_shed = tool_shed_repository.tool_shed AttributeError: 'NoneType' object has no attribute 'tool_shed' galaxy.tools.toolbox.base ERROR 2017-03-14 11:15:17,768 Error reading tool from path: toolshed.g2.bx.psu.edu/repos/devteam/fastqc/a00a6402d09a/fas tqc/rgFastQC.xml Traceback (most recent call last): File "/home/berntm/galaxy/lib/galaxy/tools/toolbox/base.py", line 560, in _load_tool_tag_set tool.tool_shed = tool_shed_repository.tool_shed AttributeError: 'NoneType' object has no attribute 'tool_shed' galaxy.tools.toolbox.base ERROR 2017-03-14 11:15:17,773 Error reading tool from path: toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer_by_qualit y/25c24379693a/fastq_trimmer_by_quality/fastq_trimmer_by_quality.xml Traceback (most recent call last): File "/home/berntm/galaxy/lib/galaxy/tools/toolbox/base.py", line 560, in _load_tool_tag_set tool.tool_shed = tool_shed_repository.tool_shed AttributeError: 'NoneType' object has no attribute 'tool_shed' galaxy.tools.toolbox.base ERROR 2017-03-14 11:15:17,779 Error reading tool from path: toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer_by_qualit y/04a609b0fdf6/fastq_trimmer_by_quality/fastq_trimmer_by_quality.xml Traceback (most recent call last): File "/home/berntm/galaxy/lib/galaxy/tools/toolbox/base.py", line 560, in _load_tool_tag_set tool.tool_shed = tool_shed_repository.tool_shed AttributeError: 'NoneType' object has no attribute 'tool_shed' galaxy.tools.toolbox.base ERROR 2017-03-14 11:15:17,788 Error reading tool from path: toolshed.g2.bx.psu.edu/repos/devteam/fastq_trimmer/e0cfb5a70 3ce/fastq_trimmer/fastq_trimmer.xml Traceback (most recent call last): File "/home/berntm/galaxy/lib/galaxy/tools/toolbox/base.py", line 560, in _load_tool_tag_set tool.tool_shed = tool_shed_repository.tool_shed AttributeError: 'NoneType' object has no attribute 'tool_shed' galaxy.tools.toolbox.base ERROR 2017-03-14 11:15:17,793 Error reading tool from path: toolshed.g2.bx.psu.edu/repos/geert-vandeweyer/fastq_qc_trimm er/cba6282b5dc8/fastq_qc_trimmer/Paired_fastQ_trimmer.xml Traceback (most recent call last): File "/home/berntm/galaxy/lib/galaxy/tools/toolbox/base.py", line 560, in _load_tool_tag_set tool.tool_shed = tool_shed_repository.tool_shed AttributeError: 'NoneType' object has no attribute 'tool_shed' Best, Matthias -- ------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt(a)ufz.de, www.ufz.de Sitz der Gesellschaft/Registered Office: Leipzig Registergericht/Registration Office: Amtsgericht Leipzig Handelsregister Nr./Trade Register Nr.: B 4703 Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus Wissenschaftlicher Geschäftsführer/Scientific Managing Director: Prof. Dr. Dr. h.c. Georg Teutsch Administrative Geschäftsführerin/ Administrative Managing Director: Prof. Dr. Heike Graßmann ------------------------------------------- ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/