hi, I'm getting the following error when trying to reach the main/test toolsheds. Are they down? **** This webpage is not available Chromium's connection attempt to toolshed.g2.bx.psu.edu was rejected. The website may be down, or your network may not be properly configured. **** also from within galaxy, I can't reach it, nor can the galaxy-process itself: galaxy.model.migrate.check INFO 2013-05-02 12:12:45,219 At database version 114 tool_shed.galaxy_install.migrate.check DEBUG 2013-05-02 12:12:45,390 pysqlite>=2 egg successfully loaded for sqlite dialect The URL http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=bowtie_wrappers&owner=devteam&changeset_revision=0c7e4eadfb3c&from_install_manager=True raised the exception: <urlopen error [Errno 111] Connection refused> The URL http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=bowtie_color_wrappers&owner=devteam&changeset_revision=fd0914e451c5&from_install_manager=True raised the exception: <urlopen error [Errno 111] Connection refused> The URL http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=lastz&owner=devteam&changeset_revision=0801f8207d30&from_install_manager=True raised the exception: <urlopen error [Errno 111] Connection refused> The URL http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=lastz_paired_reads&owner=devteam&changeset_revision=96825cee5c25&from_install_manager=True raised the exception: <urlopen error [Errno 111] Connection refused> Traceback (most recent call last): File "/galaxy/galaxy-beta/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 37, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File "/galaxy/galaxy-beta/galaxy-dist/lib/galaxy/app.py", line 54, in __init__ verify_tools( self, db_url, kwargs.get( 'global_conf', {} ).get( '__file__', None ), self.config.database_engine_options ) File "/galaxy/galaxy-beta/galaxy-dist/lib/tool_shed/galaxy_install/migrate/check.py", line 56, in verify_tools tool_shed_accessible, missing_tool_configs_dict = common_util.check_for_missing_tools( app, tool_panel_configs, latest_tool_migration_script_number ) File "/galaxy/galaxy-beta/galaxy-dist/lib/tool_shed/util/common_util.py", line 66, in check_for_missing_tools return tool_shed_accessible, missing_tool_configs_dict UnboundLocalError: local variable 'missing_tool_configs_dict' referenced before assignment -- Geert Vandeweyer, Ph.D. Department of Medical Genetics University of Antwerp Prins Boudewijnlaan 43 2650 Edegem Belgium Tel: +32 (0)3 275 97 56 E-mail: geert.vandeweyer@ua.ac.be http://ua.ac.be/cognitivegenetics http://www.linkedin.com/pub/geert-vandeweyer/26/457/726
Hello Geert, Thanks for reporting this - it looks like our server or network is down. We'll get this resolved as soon as possible and let you know when it is available. Greg Von Kuster On May 2, 2013, at 6:16 AM, Geert Vandeweyer wrote:
hi,
I'm getting the following error when trying to reach the main/test toolsheds. Are they down?
**** This webpage is not available Chromium's connection attempt to toolshed.g2.bx.psu.edu was rejected. The website may be down, or your network may not be properly configured. ****
also from within galaxy, I can't reach it, nor can the galaxy-process itself:
galaxy.model.migrate.check INFO 2013-05-02 12:12:45,219 At database version 114 tool_shed.galaxy_install.migrate.check DEBUG 2013-05-02 12:12:45,390 pysqlite>=2 egg successfully loaded for sqlite dialect The URL http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=bowtie_wrappers&owner=devteam&changeset_revision=0c7e4eadfb3c&from_install_manager=True raised the exception: <urlopen error [Errno 111] Connection refused>
The URL http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=bowtie_color_wrappers&owner=devteam&changeset_revision=fd0914e451c5&from_install_manager=True raised the exception: <urlopen error [Errno 111] Connection refused>
The URL http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=lastz&owner=devteam&changeset_revision=0801f8207d30&from_install_manager=True raised the exception: <urlopen error [Errno 111] Connection refused>
The URL http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=lastz_paired_reads&owner=devteam&changeset_revision=96825cee5c25&from_install_manager=True raised the exception: <urlopen error [Errno 111] Connection refused>
Traceback (most recent call last): File "/galaxy/galaxy-beta/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 37, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File "/galaxy/galaxy-beta/galaxy-dist/lib/galaxy/app.py", line 54, in __init__ verify_tools( self, db_url, kwargs.get( 'global_conf', {} ).get( '__file__', None ), self.config.database_engine_options ) File "/galaxy/galaxy-beta/galaxy-dist/lib/tool_shed/galaxy_install/migrate/check.py", line 56, in verify_tools tool_shed_accessible, missing_tool_configs_dict = common_util.check_for_missing_tools( app, tool_panel_configs, latest_tool_migration_script_number ) File "/galaxy/galaxy-beta/galaxy-dist/lib/tool_shed/util/common_util.py", line 66, in check_for_missing_tools return tool_shed_accessible, missing_tool_configs_dict UnboundLocalError: local variable 'missing_tool_configs_dict' referenced before assignment
--
Geert Vandeweyer, Ph.D. Department of Medical Genetics University of Antwerp Prins Boudewijnlaan 43 2650 Edegem Belgium Tel: +32 (0)3 275 97 56 E-mail: geert.vandeweyer@ua.ac.be http://ua.ac.be/cognitivegenetics http://www.linkedin.com/pub/geert-vandeweyer/26/457/726
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Both tool shed's should now be accessible. Sorry for the downtime. On May 2, 2013, at 6:26 AM, Greg Von Kuster wrote:
Hello Geert,
Thanks for reporting this - it looks like our server or network is down. We'll get this resolved as soon as possible and let you know when it is available.
Greg Von Kuster
On May 2, 2013, at 6:16 AM, Geert Vandeweyer wrote:
hi,
I'm getting the following error when trying to reach the main/test toolsheds. Are they down?
**** This webpage is not available Chromium's connection attempt to toolshed.g2.bx.psu.edu was rejected. The website may be down, or your network may not be properly configured. ****
also from within galaxy, I can't reach it, nor can the galaxy-process itself:
galaxy.model.migrate.check INFO 2013-05-02 12:12:45,219 At database version 114 tool_shed.galaxy_install.migrate.check DEBUG 2013-05-02 12:12:45,390 pysqlite>=2 egg successfully loaded for sqlite dialect The URL http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=bowtie_wrappers&owner=devteam&changeset_revision=0c7e4eadfb3c&from_install_manager=True raised the exception: <urlopen error [Errno 111] Connection refused>
The URL http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=bowtie_color_wrappers&owner=devteam&changeset_revision=fd0914e451c5&from_install_manager=True raised the exception: <urlopen error [Errno 111] Connection refused>
The URL http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=lastz&owner=devteam&changeset_revision=0801f8207d30&from_install_manager=True raised the exception: <urlopen error [Errno 111] Connection refused>
The URL http://toolshed.g2.bx.psu.edu/repository/get_tool_dependencies?name=lastz_paired_reads&owner=devteam&changeset_revision=96825cee5c25&from_install_manager=True raised the exception: <urlopen error [Errno 111] Connection refused>
Traceback (most recent call last): File "/galaxy/galaxy-beta/galaxy-dist/lib/galaxy/webapps/galaxy/buildapp.py", line 37, in app_factory app = UniverseApplication( global_conf = global_conf, **kwargs ) File "/galaxy/galaxy-beta/galaxy-dist/lib/galaxy/app.py", line 54, in __init__ verify_tools( self, db_url, kwargs.get( 'global_conf', {} ).get( '__file__', None ), self.config.database_engine_options ) File "/galaxy/galaxy-beta/galaxy-dist/lib/tool_shed/galaxy_install/migrate/check.py", line 56, in verify_tools tool_shed_accessible, missing_tool_configs_dict = common_util.check_for_missing_tools( app, tool_panel_configs, latest_tool_migration_script_number ) File "/galaxy/galaxy-beta/galaxy-dist/lib/tool_shed/util/common_util.py", line 66, in check_for_missing_tools return tool_shed_accessible, missing_tool_configs_dict UnboundLocalError: local variable 'missing_tool_configs_dict' referenced before assignment
--
Geert Vandeweyer, Ph.D. Department of Medical Genetics University of Antwerp Prins Boudewijnlaan 43 2650 Edegem Belgium Tel: +32 (0)3 275 97 56 E-mail: geert.vandeweyer@ua.ac.be http://ua.ac.be/cognitivegenetics http://www.linkedin.com/pub/geert-vandeweyer/26/457/726
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (2)
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Geert Vandeweyer -
Greg Von Kuster