Hi Team,
I am trying to get GATK tools added to my cloud instance and keep getting the following error: [Errno 2] No such file or directory: '/mnt/galaxyData/tmp/tmpszWRLP/GenomeAnalysisTKLite-2.3-9-gdcdccbb/GenomeAnalysisTK.jar'. Then when I try to install it again I get the following: All selected tool dependencies are already installed. I also get the following error: Initializing repository installation failed.
Thanks,
Iry
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On Wed, Apr 24, 2013 at 5:05 PM, Iry Witham Iry.Witham@jax.org wrote:
Hi Team,
I am trying to get GATK tools added to my cloud instance and keep getting the following error: [Errno 2] No such file or directory: '/mnt/galaxyData/tmp/tmpszWRLP/GenomeAnalysisTKLite-2.3-9-gdcdccbb/GenomeAnalysisTK.jar'. Then when I try to install it again I get the following: All selected tool dependencies are already installed. I also get the following error: Initializing repository installation failed.
Thanks,
Iry
Did you solve this Iry?
I'm seeing the same "Initializing repository installation failed" error intermediately myself, for instance with package_freetype_2_4 just now - I'm unclear if this was a false alarm or not. I am currently deinstalling/reinstalling things.
Peter
Hi Peter,
On Wed, Apr 24, 2013 at 5:05 PM, Iry Witham Iry.Witham@jax.org wrote:
Hi Team,
I am trying to get GATK tools added to my cloud instance and keep getting the following error: [Errno 2] No such file or directory: '/mnt/galaxyData/tmp/tmpszWRLP/GenomeAnalysisTKLite-2.3-9-gdcdccbb/GenomeAnalysisTK.jar'. Then when I try to install it again I get the following: All selected tool dependencies are already installed. I also get the following error: Initializing repository installation failed.
Thanks,
Iry
Did you solve this Iry?
I'm seeing the same "Initializing repository installation failed" error intermediately myself, for instance with package_freetype_2_4 just now - I'm unclear if this was a false alarm or not. I am currently deinstalling/reinstalling things.
do you see it in the web interface? It's a false positive warning. It never did any harm for me. I think I have filled it as trello issue once, beside many other small usability bugs, but as usual I could not find the card.
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On Mon, Aug 12, 2013 at 12:51 PM, Bjoern Gruening bjoern.gruening@gmail.com wrote:
Hi Peter,
On Wed, Apr 24, 2013 at 5:05 PM, Iry Witham Iry.Witham@jax.org wrote:
Hi Team,
I am trying to get GATK tools added to my cloud instance and keep getting the following error: [Errno 2] No such file or directory: '/mnt/galaxyData/tmp/tmpszWRLP/GenomeAnalysisTKLite-2.3-9-gdcdccbb/GenomeAnalysisTK.jar'. Then when I try to install it again I get the following: All selected tool dependencies are already installed. I also get the following error: Initializing repository installation failed.
Thanks,
Iry
Did you solve this Iry?
I'm seeing the same "Initializing repository installation failed" error intermediately myself, for instance with package_freetype_2_4 just now - I'm unclear if this was a false alarm or not. I am currently deinstalling/reinstalling things.
do you see it in the web interface? It's a false positive warning. It never did any harm for me. I think I have filled it as trello issue once, beside many other small usability bugs, but as usual I could not find the card.
Yes, it pops up in the middle of the web interface - I wasn't sure if it was a real failure or not, so you may be right about it being a false positive.
Thanks.
Peter
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Bjoern Gruening -
Iry Witham -
Peter Cock