On 1/21/10 4:13 PM, "SHAUN WEBB" <swebb1(a)staffmail.ed.ac.uk> wrote:
Hi, not sure if this is a bug or a problem with our local install.
I am having trouble uploading binary files to a library. The error
given is "Unable to finish job, tool error", the full traceback is
I have added a few extra binary datatypes to the binary.py file but
this seems to be affecting all binary types. I have been able to
upload these files in the past so I think the problem has been caused
by a recent update.
We had a similar very bizarre problem: The uploads only worked, if the files
were owned by the user 'galaxy'. As soon as they were owned by a different
user (even if they were readable by the everybody) it didn't work.
We don't have an explanation. It might just be a local curiosity, but give
it a try.
Thanks in advance for your help
galaxy.jobs.runners.local ERROR 2010-01-21 15:05:23,968 Job wrapper
finish method failed
Traceback (most recent call last):
line 122, in run_job
job_wrapper.finish( stdout, stderr )
line 558, in finish
line 537, in set_peek
return self.datatype.set_peek( self, is_multi_byte=is_multi_byte )
38, in set_peek
export_url = "/history_add_to?" + urlencode(
sequence','info':'Sequence file','dbkey':dataset.dbkey} )
AttributeError: 'LibraryDatasetDatasetAssociation' object has no
220.127.116.11 - - [21/Jan/2010:15:05:24 +0100] "POST
/library_common/library_item_updates HTTP/1.1" 200 -
_admin&id=2234cb1fd1df4331&created_ldda_ids=68" "Mozilla/5.0 (X11; U;
x86_64; en-GB; rv:18.104.22.168) Gecko/2010010604 Ubuntu/8.04 (hardy)