New subject: [spam?] Cloudman cluster not starting workers

17 Jun 2015

Thanks – I’ve attached the log. I just tried to start a worker and
let it go to the first reboot and then copied this log.  I logged
into the worker and it looks ok (dmesg, etc) the only noticable
thing was /mnt is empty (just a lost+found directory) and I was
expecting to see an nfs mount for galaxy export or something.  But
I’m still finding my way round the system.  It may also have been
the time in the reboot cycle that I was there.

Best wishes,

Nick
-- 
Nick Dickens
DPhil BSc ARCS

Bioinformatics Team Leader
Wellcome Trust Centre for Molecular Parasitology
B6-21 SGDB
120 University Place
Glasgow
G12 8TA

Tel: +44 141 330 8282 <tel:%2B44%20141%20330%208282>

http://fb.me/WTCMPbix
@WTCMPbix
http://www.gla.ac.uk/researchinstitutes/iii/staff/nickdickens/
http://www.gla.ac.uk/researchinstitutes/iii/staff/jeremymottram/comparativegenomicsofleishmania/

From: Enis Afgan <enis.afgan@irb.hr <mailto:enis.afgan@irb.hr>>
Date: Friday, 19 June 2015 17:00
To: Nick Dickens <nick.dickens@glasgow.ac.uk
<mailto:nick.dickens@glasgow.ac.uk>>
Cc: "galaxy-dev@lists.galaxyproject.org
<mailto:galaxy-dev@lists.galaxyproject.org>"
<galaxy-dev@lists.galaxyproject.org
<mailto:galaxy-dev@lists.galaxyproject.org>>
Subject: Re: [spam?] [galaxy-dev] Cloudman cluster not starting
workers

Hi Nick,
Sorry to hear you're having trouble. I just tried a couple of
scenarios and they all worked as expected (e.g., with and without
elastic IPs, different instance types).

The main CloudMan log is located in /mnt/cm/paster.log, on both
master and worker instances (if you didn't download the ssh key
from cloudlaunch, you can ssh with ubuntu username and the same
password as provided on the cloudlaunch form). The log is also
available from the UI if you go to Admin page and then click 'Show
CloudMan log' under 'System controls'. If you can share that, we
can hopefully figure out what's going on.

Best,
Enis

On Wed, Jun 17, 2015 at 11:47 AM, Nicholas Dickens
<Nick.Dickens@glasgow.ac.uk <mailto:Nick.Dickens@glasgow.ac.uk>>
wrote:

    Hi All,

    First time post, as a quick intro, I’m have some reasonable
    experience with EC2 & AWS for developing our own pipelines,
    I’m comfortable in python and *nix flavours and I am
    developing a completely custom galaxy in AWS for members of
    the WTCMP, Glasgow.  In the meantime, I have thrown up a quick
    cloudman galaxy using the cloudstart and the cloudman 2.3 ami
    (ami-a7dbf6ce) in us-east-1. Auto–scaling didn’t seem to work
    so I’ve switched it off and added nodes manually, I tried
    various sizes including ‘same as master’ instances but they
    just don’t start – in the EC2 console I can see them and see
    them running. But they’re constantly pending in the /cloud
    interface and in the log they reboot 4 times and then
    terminate – apparently not responding "10:16:56 - Instance
    i-xxxxxx not responding after 4 reboots. Terminating instance".

    It’s out of the box, I editted the universe_wsgi.ini… file to
    disallow user registration and allow me to impersonate users
    but didn’t change anything else.  The only other configuration
    I’ve done is associate an elastic IP with the master instance
    so I can have a more static url for a couple of test users (if
    I need to destroy it and start again, etc).

    I’m new to the system so don’t know which logs are best to
    check…and am I missing something obvious?  It there a known
    bug when using elastic IPs? I’ve googled but with no joy.

    Thanks for your help and best wishes,

    Nick
    -- 
    Nick Dickens
    DPhil BSc ARCS

    Bioinformatics Team Leader
    Wellcome Trust Centre for Molecular Parasitology
    B6-21 SGDB
    120 University Place
    Glasgow
    G12 8TA

    Tel: +44 141 330 8282 <tel:%2B44%20141%20330%208282>

    http://fb.me/WTCMPbix
    @WTCMPbix
    http://www.gla.ac.uk/researchinstitutes/iii/staff/nickdickens/
    http://www.gla.ac.uk/researchinstitutes/iii/staff/jeremymottram/comparativegenomicsofleishmania/

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