Hello, I have set up a galaxy instance and I'm trying to use Apache so that I can access UCSC. I have the following set in my httpd.conf (below) file in Apache2 and I've altered the folioing in my universe_wsgi.ini file. When I launch galaxy I no longer see my history. If it attempt to login the screen refreshes but it does not log me into the system. i.e. my history does not show up and I do not get the admin tab to appear. What am I doing wrong? httpd.conf settings #Changes for Galaxy 16 Oct 2013 # Define Galaxy as a valid Proxy <Proxy http://localhost:8080> Order deny,allow Allow from all </Proxy> RewriteEngine on <Location "/"> XSendFile On XSendFilePath / </Location> RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/static/style/(.*) /Volumes/Jose-Drobo/galaxy-dist/static/june_2007_style/blue/$1 [L] RewriteRule ^/static/(.*) /Volumes/Jose-Drobo/galaxy-dist/static/$1 [L] RewriteRule ^/favicon.ico /Volumes/Jose-Drobo/galaxy-dist/static/favicon.ico [L] RewriteRule ^/robots.txt /Volumes/Jose-Drobo/galaxy-dist/static/robots.txt [L] RewriteRule ^(.*) http://localhost:8080$1 [P] #ucsc <Location "/root/display_as"> Satisfy Any Order deny,allow Deny from all Allow from hgw1.cse.ucsc.edu Allow from hgw2.cse.ucsc.edu Allow from hgw3.cse.ucsc.edu Allow from hgw4.cse.ucsc.edu Allow from hgw5.cse.ucsc.edu Allow from hgw6.cse.ucsc.edu Allow from hgw7.cse.ucsc.edu Allow from hgw8.cse.ucsc.edu </Location> <LocationMatch /ucsc_(bam|big) > # This is to enable bam and bigWig (or bigBEd in the future) by traversing the proxy # Allow from our internal network # and set the http header to a fake email address, this is required because of galaxy architecture... Satisfy any Order deny,allow Allow from all </LocationMatch> Changes to universe_wsgi.ini host = 0.0.0.0 [filter:proxy-prefix] use = egg:PasteDeploy#prefix prefix = /galaxy filter-with = proxy-prefix cookie_path = /galaxy apache_xsendfile = True allow_user_creation = True environment_setup_file = /Volumes/Jose-Drobo/galaxy-dist/.bashrc Cheers Ian
I've switched from Chrome to Safari and that seems to have fixed the problem. Is there a bug that I need to pull an update for? $ hg summary parent: 10421:a477486bf18e tip Bugfix for tool-to-destination mapping, tool ids are lowercased but the mapping id was not lowercased. branch: stable commit: 36 modified, 16986 unknown update: (current) Ian On Oct 16, 2013, at 8:35 PM, UMD Bioinformatics <bioinformatics.umd@gmail.com> wrote:
Hello, I have set up a galaxy instance and I'm trying to use Apache so that I can access UCSC. I have the following set in my httpd.conf (below) file in Apache2 and I've altered the folioing in my universe_wsgi.ini file. When I launch galaxy I no longer see my history. If it attempt to login the screen refreshes but it does not log me into the system. i.e. my history does not show up and I do not get the admin tab to appear. What am I doing wrong?
httpd.conf settings #Changes for Galaxy 16 Oct 2013 # Define Galaxy as a valid Proxy <Proxy http://localhost:8080> Order deny,allow Allow from all </Proxy> RewriteEngine on <Location "/"> XSendFile On XSendFilePath / </Location> RewriteRule ^/galaxy$ /galaxy/ [R] RewriteRule ^/static/style/(.*) /Volumes/Jose-Drobo/galaxy-dist/static/june_2007_style/blue/$1 [L] RewriteRule ^/static/(.*) /Volumes/Jose-Drobo/galaxy-dist/static/$1 [L] RewriteRule ^/favicon.ico /Volumes/Jose-Drobo/galaxy-dist/static/favicon.ico [L] RewriteRule ^/robots.txt /Volumes/Jose-Drobo/galaxy-dist/static/robots.txt [L] RewriteRule ^(.*) http://localhost:8080$1 [P]
#ucsc <Location "/root/display_as"> Satisfy Any Order deny,allow Deny from all Allow from hgw1.cse.ucsc.edu Allow from hgw2.cse.ucsc.edu Allow from hgw3.cse.ucsc.edu Allow from hgw4.cse.ucsc.edu Allow from hgw5.cse.ucsc.edu Allow from hgw6.cse.ucsc.edu Allow from hgw7.cse.ucsc.edu Allow from hgw8.cse.ucsc.edu </Location> <LocationMatch /ucsc_(bam|big) > # This is to enable bam and bigWig (or bigBEd in the future) by traversing the proxy # Allow from our internal network # and set the http header to a fake email address, this is required because of galaxy architecture... Satisfy any Order deny,allow Allow from all </LocationMatch>
Changes to universe_wsgi.ini
host = 0.0.0.0
[filter:proxy-prefix] use = egg:PasteDeploy#prefix prefix = /galaxy
filter-with = proxy-prefix cookie_path = /galaxy
apache_xsendfile = True
allow_user_creation = True
environment_setup_file = /Volumes/Jose-Drobo/galaxy-dist/.bashrc
Cheers Ian
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