Data uploaded with new upload tool doesn't get added to history
Hey there Using the new upload tool my data uploads but never appears in the history. All I can see in paster.log when I do an upload is: 10.8.0.2 - - [09/Oct/2014:20:43:58 +0200] "POST /tool_runner/index HTTP/1.0" 200 - "https://phillipl.sanbi.ac.za/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:32.0) Gecko/20100101 Firefox/32.0" 10.8.0.2 - - [09/Oct/2014:20:43:58 +0200] "GET /api/histories/f597429621d6eb2b/contents HTTP/1.0" 200 - "https://phillipl.sanbi.ac.za/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:32.0) Gecko/20100101 Firefox/32.0" 10.8.0.2 - - [09/Oct/2014:20:43:58 +0200] "GET /api/histories/f597429621d6eb2b HTTP/1.0" 200 - "https://phillipl.sanbi.ac.za/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:32.0) Gecko/20100101 Firefox/32.0" No errors in the javascript console, and this happens with both Chrome and Firefox (on Linux), code is latest galaxy-central. Any ideas where to debug? Thanks, Peter
Just to follow up on this thread -- we resolved this over IRC. It was a proxy configuration issue with nginx's upload_config settings. Correct settings are now on the wiki, but the previous rule for: location _upload_done : "set $dst /tool_runner/index;" is was causing a redirect and preventing communication with the tools API, which the new upload form works. -Dannon On Thu, Oct 9, 2014 at 3:00 PM, Peter van Heusden <pvh@sanbi.ac.za> wrote:
Hey there
Using the new upload tool my data uploads but never appears in the history. All I can see in paster.log when I do an upload is:
10.8.0.2 - - [09/Oct/2014:20:43:58 +0200] "POST /tool_runner/index HTTP/1.0" 200 - "https://phillipl.sanbi.ac.za/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:32.0) Gecko/20100101 Firefox/32.0" 10.8.0.2 - - [09/Oct/2014:20:43:58 +0200] "GET /api/histories/f597429621d6eb2b/contents HTTP/1.0" 200 - "https://phillipl.sanbi.ac.za/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:32.0) Gecko/20100101 Firefox/32.0" 10.8.0.2 - - [09/Oct/2014:20:43:58 +0200] "GET /api/histories/f597429621d6eb2b HTTP/1.0" 200 - "https://phillipl.sanbi.ac.za/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:32.0) Gecko/20100101 Firefox/32.0"
No errors in the javascript console, and this happens with both Chrome and Firefox (on Linux), code is latest galaxy-central. Any ideas where to debug?
Thanks, Peter
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Hi Dannon, so the very last line ("set $dst /galaxy/tool_runner/index;") on the wiki page https://wiki.galaxyproject.org/Admin/Config/nginxProxy is still wrong? Ciao, Nicola Il giorno ven, 10/10/2014 alle 08.50 -0400, Dannon Baker ha scritto:
Just to follow up on this thread -- we resolved this over IRC. It was a proxy configuration issue with nginx's upload_config settings.
Correct settings are now on the wiki, but the previous rule for: location _upload_done : "set $dst /tool_runner/index;" is was causing a redirect and preventing communication with the tools API, which the new upload form works.
-Dannon
On Thu, Oct 9, 2014 at 3:00 PM, Peter van Heusden <pvh@sanbi.ac.za> wrote:
Hey there
Using the new upload tool my data uploads but never appears in the history. All I can see in paster.log when I do an upload is:
10.8.0.2 - - [09/Oct/2014:20:43:58 +0200] "POST /tool_runner/index HTTP/1.0" 200 - "https://phillipl.sanbi.ac.za/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:32.0) Gecko/20100101 Firefox/32.0" 10.8.0.2 - - [09/Oct/2014:20:43:58 +0200] "GET /api/histories/f597429621d6eb2b/contents HTTP/1.0" 200 - "https://phillipl.sanbi.ac.za/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:32.0) Gecko/20100101 Firefox/32.0" 10.8.0.2 - - [09/Oct/2014:20:43:58 +0200] "GET /api/histories/f597429621d6eb2b HTTP/1.0" 200 - "https://phillipl.sanbi.ac.za/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:32.0) Gecko/20100101 Firefox/32.0"
No errors in the javascript console, and this happens with both Chrome and Firefox (on Linux), code is latest galaxy-central. Any ideas where to debug?
Thanks, Peter
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D'oh. It's correct in the block right above that, but incorrect there. I'll fix it now. On Fri, Oct 10, 2014 at 9:44 AM, Nicola Soranzo <soranzo@crs4.it> wrote:
Hi Dannon, so the very last line ("set $dst /galaxy/tool_runner/index;") on the wiki page https://wiki.galaxyproject.org/Admin/Config/nginxProxy is still wrong?
Ciao, Nicola
Il giorno ven, 10/10/2014 alle 08.50 -0400, Dannon Baker ha scritto:
Just to follow up on this thread -- we resolved this over IRC. It was a proxy configuration issue with nginx's upload_config settings.
Correct settings are now on the wiki, but the previous rule for: location _upload_done : "set $dst /tool_runner/index;" is was causing a redirect and preventing communication with the tools API, which the new upload form works.
-Dannon
On Thu, Oct 9, 2014 at 3:00 PM, Peter van Heusden <pvh@sanbi.ac.za> wrote:
Hey there
Using the new upload tool my data uploads but never appears in the history. All I can see in paster.log when I do an upload is:
10.8.0.2 - - [09/Oct/2014:20:43:58 +0200] "POST /tool_runner/index HTTP/1.0" 200 - "https://phillipl.sanbi.ac.za/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:32.0) Gecko/20100101 Firefox/32.0" 10.8.0.2 - - [09/Oct/2014:20:43:58 +0200] "GET /api/histories/f597429621d6eb2b/contents HTTP/1.0" 200 - "https://phillipl.sanbi.ac.za/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:32.0) Gecko/20100101 Firefox/32.0" 10.8.0.2 - - [09/Oct/2014:20:43:58 +0200] "GET /api/histories/f597429621d6eb2b HTTP/1.0" 200 - "https://phillipl.sanbi.ac.za/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:32.0) Gecko/20100101 Firefox/32.0"
No errors in the javascript console, and this happens with both Chrome and Firefox (on Linux), code is latest galaxy-central. Any ideas where to debug?
Thanks, Peter
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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(And thanks for the catch!) On Fri, Oct 10, 2014 at 9:48 AM, Dannon Baker <dannon.baker@gmail.com> wrote:
D'oh. It's correct in the block right above that, but incorrect there. I'll fix it now.
On Fri, Oct 10, 2014 at 9:44 AM, Nicola Soranzo <soranzo@crs4.it> wrote:
Hi Dannon, so the very last line ("set $dst /galaxy/tool_runner/index;") on the wiki page https://wiki.galaxyproject.org/Admin/Config/nginxProxy is still wrong?
Ciao, Nicola
Il giorno ven, 10/10/2014 alle 08.50 -0400, Dannon Baker ha scritto:
Just to follow up on this thread -- we resolved this over IRC. It was a proxy configuration issue with nginx's upload_config settings.
Correct settings are now on the wiki, but the previous rule for: location _upload_done : "set $dst /tool_runner/index;" is was causing a redirect and preventing communication with the tools API, which the new upload form works.
-Dannon
On Thu, Oct 9, 2014 at 3:00 PM, Peter van Heusden <pvh@sanbi.ac.za> wrote:
Hey there
Using the new upload tool my data uploads but never appears in the history. All I can see in paster.log when I do an upload is:
10.8.0.2 - - [09/Oct/2014:20:43:58 +0200] "POST /tool_runner/index HTTP/1.0" 200 - "https://phillipl.sanbi.ac.za/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:32.0) Gecko/20100101 Firefox/32.0" 10.8.0.2 - - [09/Oct/2014:20:43:58 +0200] "GET /api/histories/f597429621d6eb2b/contents HTTP/1.0" 200 - "https://phillipl.sanbi.ac.za/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:32.0) Gecko/20100101 Firefox/32.0" 10.8.0.2 - - [09/Oct/2014:20:43:58 +0200] "GET /api/histories/f597429621d6eb2b HTTP/1.0" 200 - "https://phillipl.sanbi.ac.za/root" "Mozilla/5.0 (X11; Ubuntu; Linux x86_64; rv:32.0) Gecko/20100101 Firefox/32.0"
No errors in the javascript console, and this happens with both Chrome and Firefox (on Linux), code is latest galaxy-central. Any ideas where to debug?
Thanks, Peter
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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participants (3)
-
Dannon Baker -
Nicola Soranzo -
Peter van Heusden