"Fetch taxonomic representation" DOESN'T WORK
Dear all, I was trying to run the build-in function "Fetch taxonomic representation" on my local instance of Galaxy, however it doesn't work as I expect. The error message is: /bin/sh: taxBuilder: not found Anyone has seen this problem before? Please tell me what to do to solve this problem? A lot of thanks Tyler
On Apr 17, 2012, at 1:32 PM, JIE CHEN wrote:
Dear all,
I was trying to run the build-in function "Fetch taxonomic representation" on my local instance of Galaxy, however it doesn't work as I expect. The error message is: /bin/sh: taxBuilder: not found
Anyone has seen this problem before? Please tell me what to do to solve this problem? A lot of thanks
Hi Tyler, Some Galaxy tools depend on external binaries not included in the Galaxy distribution, and this is one of those tools. The full list and where to get the tools from can be found here: http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Dependencies This specific tool can be found at: https://bitbucket.org/natefoo/taxonomy --nate
Tyler ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (2)
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JIE CHEN
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Nate Coraor