On Nov 19, 2012, at 10:26 AM, Sajoscha Sauer wrote:

Hi,

We are running galaxy on the cluster with the 'real user' submission. It all works fine, but at the end of the run we found something unexpected.

All the .dat files in the file_path folder are owned by the user running Galaxy, but all the folders (e.g. dataset_25808_files) are still owned by the user that was running the tool on the cluster. Is this the expected outcome or is there something wrong?

Hi Sajoscha, Are your tools writing to the directory specified by the output's 'extra_files_path' attribute, or by its 'files_path' attribute? 'extra_files_path' always refers to the directory underneath the files/ directory, but 'files_path' refers to the temporary path under the job's working directory. You'll need to use 'files_path' to have the outputs collected and ownership changed after completion. --nate

Thanks for your help,

Sajoscha

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