megablast installation in Galaxy
Hi I am implementing a local installation of galaxy and am stuck on the megablast portion. I installed blast 2.2.24 which includes formatdb and megablast. The installation guide says to use BLAST+, but that does not have megablast or formatdb in it. The megablast installation I have does not output in the correct format. How do I install BLAST+ so that it will work in galaxy. -Eric
On Tue, Oct 5, 2010 at 5:47 PM, Eric Enns <eric.enns@gmail.com> wrote:
Hi I am implementing a local installation of galaxy and am stuck on the megablast portion. I installed blast 2.2.24 which includes formatdb and megablast. The installation guide says to use BLAST+, but that does not have megablast or formatdb in it. The megablast installation I have does not output in the correct format. How do I install BLAST+ so that it will work in galaxy. -Eric
The wiki is wrong, the megablast wrapper current uses the old NCBI "legacy" BLAST, not BLAST+. See also: http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-September/003338.html Peter
Thanks for pointing this out--I've updated the wiki. Kelly On Oct 5, 2010, at 2:26 PM, Peter wrote:
On Tue, Oct 5, 2010 at 5:47 PM, Eric Enns <eric.enns@gmail.com> wrote:
Hi I am implementing a local installation of galaxy and am stuck on the megablast portion. I installed blast 2.2.24 which includes formatdb and megablast. The installation guide says to use BLAST+, but that does not have megablast or formatdb in it. The megablast installation I have does not output in the correct format. How do I install BLAST+ so that it will work in galaxy. -Eric
The wiki is wrong, the megablast wrapper current uses the old NCBI "legacy" BLAST, not BLAST+. See also: http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-September/ 003338.html
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