Thanks for your patience and help with this too!
I've upgraded to ebf72cda61e7, cleaned all up (db, tool_conf.xml and
shed_tool_conf.xml, file system) and restarted galaxy. The import of tabular2html works
without the version attribute in the section of the tool_conf.xml file. After installing,
I've restarted again and all is working fine as expected. Thanks for the fix.
I've also tested the installation of bedtools into a new tool panel section and it
works fine too but I think it has never been an issue.
On 30 Jan 2012, at 17:46, Greg Von Kuster wrote:
Thanks for all of your patience and help with this. You uncovered a problem that is very
nice to have corrected. The fix is included in change set 6634:ebf72cda61e7 on our
central repository. This change set will allow you to have section tags in your
tool_conf.xml file that do not include version attributes. Selecting these sections to
contain tools installed with a tool shed repository will now be functionally correct.
On Jan 30, 2012, at 12:08 PM, Anne Pajon wrote:
> Brilliant! It is working - no more server error and I now have a shed_tool_conf.xml
> Let me know when you commit your next change set, so I will be able to test.
> Thanks a lot for your help.
Greg Von Kuster
Galaxy Development Team
Anne Pajon, Ph.D.
Cancer Research UK - Cambridge Research Institute
Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE
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