Christophe, Glad it's working. The updates should merge seamlessly so you shouldn't need to do anything else when you update again. That said, for future use, you can swap branches like: 'hg update stable' to swap to the stable branch. If you're on galaxy-dist, you can still pull (and update) from the stable branch in galaxy-central using 'hg pull -u -b stable http://bitbucket.org/galaxy/galaxy-central'. -Dannon On Wed, Jun 12, 2013 at 5:33 PM, Christophe Antoniewski < christophe.antoniewski@snv.jussieu.fr> wrote:

Thank you so much Björn,

I made the change of the file directly by hand (not sure to be able to cleanly switch to default from stable with the new mercurial mode) and it worked.

Chris

2013/6/12 Björn Grüning <bjoern.gruening@pharmazie.uni-freiburg.de>

...

Hi Christophe,

can you try to update to the latest revision?

It is fixed here:

https://bitbucket.org/galaxy/galaxy-central/commits/47b86d6a9077facb54804576...

Cheers, Bjoern

...

Hi, Sorry to bother again, but we have now a problem with the last release of galaxy-dist

The lack of a python module asked by a python eggs seems to interrupt our postgresql database upgrade from version '114' to '115'

sh manage_db.sh upgrade Traceback (most recent call last): File "./scripts/manage_db.py", line 13, in <module> from migrate.versioning.shell import main File

"/home/galaxy/galaxy-dist/eggs/sqlalchemy_migrate-0.7.2-py2.7.egg/migrate/versioning/shell.py", line 12, in <module>

...

from migrate.versioning import api File

"/home/galaxy/galaxy-dist/eggs/sqlalchemy_migrate-0.7.2-py2.7.egg/migrate/versioning/api.py", line 33, in <module>

...

from migrate.versioning import (repository, schema, version, File

"/home/galaxy/galaxy-dist/eggs/sqlalchemy_migrate-0.7.2-py2.7.egg/migrate/versioning/repository.py", line 13, in <module>

...

from migrate.versioning import version, pathed, cfgparse File

"/home/galaxy/galaxy-dist/eggs/sqlalchemy_migrate-0.7.2-py2.7.egg/migrate/versioning/version.py", line 10, in <module>

...

from migrate.versioning import pathed, script File

"/home/galaxy/galaxy-dist/eggs/sqlalchemy_migrate-0.7.2-py2.7.egg/migrate/versioning/pathed.py", line 11, in <module>

...

from migrate.versioning.util import KeyedInstance File

"/home/galaxy/galaxy-dist/eggs/sqlalchemy_migrate-0.7.2-py2.7.egg/migrate/versioning/util/__init__.py", line 7, in <module>

...

from decorator import decorator ImportError: No module named decorator

Any idea ?

Thanks

Chris -- Christophe Antoniewski

Drosophila Genetics and Epigenetics Laboratoire de Biolologie du Développement 9, Quai St Bernard, Boîte courrier 24 75252 Paris Cedex 05

Tel +33 1 44 27 34 39 Fax +33 1 44 27 34 45 Mobile +33 6 68 60 51 50

http://drosophile.org

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--

Christophe Antoniewski

Drosophila Genetics and Epigenetics Laboratoire de Biolologie du Développement 9, Quai St Bernard, Boîte courrier 24 75252 Paris Cedex 05

Tel +33 1 44 27 34 39 Fax +33 1 44 27 34 45 Mobile +33 6 68 60 51 50

http://drosophile.org

___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/