Re: [galaxy-dev] ProFTPD integration with Galaxy
Dear All, I am having a similar problem too. I followed the config setting provide by Mr. Perez and modified some possible error. I still cannot login my ftp server. Following is my proftpd.conf. Please help me to figure out the problem. Thanks a lot!! # This is a basic ProFTPD configuration file (rename it to # 'proftpd.conf' for actual use. It establishes a single server # and a single anonymous login. It assumes that you have a user/group # "nobody" and "ftp" for normal operation and anon. ServerName "ProFTPD Default Installation" ServerType standalone DefaultServer on # Port 21 is the standard FTP port Port 2121 # Don't use IPv6 support by default. UseIPv6 off # Umask 022 is a good standard umask to prevent new dirs and files # from being group and world writable. Umask 022 # To prevent DoS attacks, set the maximum number of child processes # to 30. If you need to allow more than 30 concurrent connections # at once, simply increase this value. Note that this ONLY works # in standalone mode, in inetd mode you should use an inetd server # that allows you to limit maximum number of processes per service # (such as xinetd). MaxInstances 30 # Set the user and group under which the server will run. User username Group groupname PassivePorts 40000 40999 # To cause every FTP user to be "jailed" (chrooted) into their home # directory, uncomment this line. #DefaultRoot ~ CreateHome on dirmode 700 # Normally, we want files to be overwriteable. AllowOverwrite on AllowStoreRestart on # Bar use of SITE CHMOD by default <Limit SITE_CHMOD> DenyAll </Limit> <Limit RETR> DenyAll </Limit> <IfModule mod_dso.c> LoadModule mod_sql.c LoadModule mod_sql_passwd.c LoadModule mod_sql_postgres.c </IfModule> SQLLogFile /pkg/biology/galaxy/proftpd/log/proftpd-sql-local ## ServerLog /pkg/biology/galaxy/proftpd/var/proftpd-server.log SystemLog /pkg/biology/galaxy/proftpd/var/proftpd-system.log #AuthPAMConfig ftp #AuthOrder mod_auth_pam.c* mod_auth_unix.c # Do not authenticate against real (system) users AuthPAM off #AuthOrder mod_sql.c # Set up mod_sql_password - Galaxy passwords are stored as hex-encoded SHA1 SQLPasswordEngine on SQLPasswordEncoding hex # Set up mod_sql to authenticate against the Galaxy database SQLEngine on SQLBackend postgres SQLConnectInfo galaxy@localhost username password SQLAuthTypes SHA1 SHA256 pbkdf2 SQLPasswordPBKDF2 SHA256 10000 24 SQLAuthenticate users # An empty directory in case chroot fails #SQLDefaultHomedir /var/opt/local/proftpd # Define a custom query for lookup that returns a passwd-like entry. UID and GID should match your Galaxy user. SQLUserInfo custom:/LookupGalaxyUser SQLPasswordUserSalt sql:/GetUserSalt #SQLNamedQuery LookupGalaxyUser SELECT "email,password,'12345','1234','/home/username/galaxyftp/%U','/bin/bash' FROM galaxy_user WHERE email='%U'" SQLNamedQuery LookupGalaxyUser SELECT "email, (CASE WHEN substring(password from 1 for 6) = 'PBKDF2' THEN substring(password from 38 for 32) ELSE password END) AS password,'12345','1234','/home/username/galaxyftp/%U','/bin/bash' FROM galaxy_user WHERE email='%U'" SQLNamedQuery GetUserSalt SELECT "(CASE WHEN SUBSTRING (password from 1 for 6) = 'PBKDF2' THEN SUBSTRING (password from 21 for 16) END) AS salt FROM galaxy_user WHERE email='%U'" I still get the message of authentication failed. 2013-07-22 11:07:29,590 mod_sql/4.3[8124]: checking password using SQLAuthType 'sha1' 2013-07-22 11:07:29,590 mod_sql/4.3[8124]: 'sha1' SQLAuthType handler reports failure 2013-07-22 11:07:29,590 mod_sql/4.3[8124]: checking password using SQLAuthType 'sha256' 2013-07-22 11:07:29,590 mod_sql/4.3[8124]: 'sha256' SQLAuthType handler reports failure 2013-07-22 11:07:29,590 mod_sql/4.3[8124]: checking password using SQLAuthType 'pbkdf2' 2013-07-22 11:07:29,619 mod_sql/4.3[8124]: 'pbkdf2' SQLAuthType handler reports failure Any suggestion on my configuration file, Thanks.
Hi, 1/ Do you know who is your (FTP) galaxy user ? The proftpd daemon should run whith this user (be carefull to permissions). 2/ Did you try a simpler way to authenticate to your postgresql server ? I mean, you choose to add some parameter as "SQLPasswordPBKDF2" or "SQLPasswordUserSalt". You should know what kind of algorithm is used to encrypt password on your postgres server and then use it... Follow this tutorial : http://wiki.galaxyproject.org/Admin/Config/Upload%20via%20FTP If it works, then add 'salt' method if you wish, or other algorithm/method to encrypt password... Regards 2013/7/22 TerryYeh@NARL <terryyeh@nchc.narl.org.tw>
Dear All,****
I am having a similar problem too. I followed the config setting provide by Mr. Perez and modified some possible error. I still cannot login my ftp server. Following is my proftpd.conf. Please help me to figure out the problem. Thanks a lot!!****
** **
# This is a basic ProFTPD configuration file (rename it to****
# 'proftpd.conf' for actual use. It establishes a single server****
# and a single anonymous login. It assumes that you have a user/group****
# "nobody" and "ftp" for normal operation and anon.****
** **
ServerName "ProFTPD Default Installation"****
ServerType standalone****
DefaultServer on****
** **
# Port 21 is the standard FTP port****
Port 2121****
** **
# Don't use IPv6 support by default.****
UseIPv6 off****
** **
# Umask 022 is a good standard umask to prevent new dirs and files****
# from being group and world writable.****
Umask 022****
** **
# To prevent DoS attacks, set the maximum number of child processes****
# to 30. If you need to allow more than 30 concurrent connections****
# at once, simply increase this value. Note that this ONLY works****
# in standalone mode, in inetd mode you should use an inetd server****
# that allows you to limit maximum number of processes per service****
# (such as xinetd).****
MaxInstances 30****
** **
# Set the user and group under which the server will run.****
User username****
Group groupname****
** **
** **
PassivePorts 40000 40999****
# To cause every FTP user to be "jailed" (chrooted) into their home****
# directory, uncomment this line.****
#DefaultRoot ~****
** **
CreateHome on dirmode 700****
** **
# Normally, we want files to be overwriteable.****
AllowOverwrite on****
** **
AllowStoreRestart on****
** **
** **
# Bar use of SITE CHMOD by default****
<Limit SITE_CHMOD>****
DenyAll****
</Limit>****
** **
<Limit RETR>****
DenyAll****
</Limit>****
** **
** **
<IfModule mod_dso.c>****
LoadModule mod_sql.c****
LoadModule mod_sql_passwd.c****
LoadModule mod_sql_postgres.c****
</IfModule>****
** **
SQLLogFile /pkg/biology/galaxy/proftpd/log/proftpd-sql-local****
** **
##****
** **
ServerLog /pkg/biology/galaxy/proftpd/var/proftpd-server.log****
SystemLog /pkg/biology/galaxy/proftpd/var/proftpd-system.log****
** **
** **
#AuthPAMConfig ftp****
#AuthOrder mod_auth_pam.c* mod_auth_unix.c****
** **
** **
# Do not authenticate against real (system) users****
AuthPAM off****
#AuthOrder mod_sql.c****
** **
** **
# Set up mod_sql_password - Galaxy passwords are stored as hex-encoded SHA1 ****
SQLPasswordEngine on****
SQLPasswordEncoding hex****
** **
# Set up mod_sql to authenticate against the Galaxy database****
SQLEngine on****
SQLBackend postgres****
SQLConnectInfo galaxy@localhost username password****
SQLAuthTypes SHA1 SHA256 pbkdf2****
SQLPasswordPBKDF2 SHA256 10000 24****
** **
SQLAuthenticate users****
** **
** **
# An empty directory in case chroot fails****
#SQLDefaultHomedir /var/opt/local/proftpd****
** **
# Define a custom query for lookup that returns a passwd-like entry. UID and GID should match your Galaxy user.****
** **
SQLUserInfo custom:/LookupGalaxyUser****
SQLPasswordUserSalt sql:/GetUserSalt****
** **
#SQLNamedQuery LookupGalaxyUser SELECT "email,password,'12345','1234','/home/username/galaxyftp/%U','/bin/bash' FROM galaxy_user WHERE email='%U'"****
SQLNamedQuery LookupGalaxyUser SELECT "email, (CASE WHEN substring(password from 1 for 6) = 'PBKDF2' THEN substring(password from 38 for 32) ELSE password END) AS password,'12345','1234','/home/username/galaxyftp/%U','/bin/bash' FROM galaxy_user WHERE email='%U'"****
SQLNamedQuery GetUserSalt SELECT "(CASE WHEN SUBSTRING (password from 1 for 6) = 'PBKDF2' THEN SUBSTRING (password from 21 for 16) END) AS salt FROM galaxy_user WHERE email='%U'"****
** **
** **
** **
I still get the message of authentication failed.****
2013-07-22 11:07:29,590 mod_sql/4.3[8124]: checking password using SQLAuthType 'sha1'****
2013-07-22 11:07:29,590 mod_sql/4.3[8124]: 'sha1' SQLAuthType handler reports failure****
2013-07-22 11:07:29,590 mod_sql/4.3[8124]: checking password using SQLAuthType 'sha256'****
2013-07-22 11:07:29,590 mod_sql/4.3[8124]: 'sha256' SQLAuthType handler reports failure****
2013-07-22 11:07:29,590 mod_sql/4.3[8124]: checking password using SQLAuthType 'pbkdf2'****
2013-07-22 11:07:29,619 mod_sql/4.3[8124]: 'pbkdf2' SQLAuthType handler reports failure****
** **
Any suggestion on my configuration file, Thanks.****
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Sorry, I didn't see the recent changes... 2013/7/22 Rémy Dernat <remy.d1@gmail.com>
Hi,
1/ Do you know who is your (FTP) galaxy user ? The proftpd daemon should run whith this user (be carefull to permissions). 2/ Did you try a simpler way to authenticate to your postgresql server ? I mean, you choose to add some parameter as "SQLPasswordPBKDF2" or "SQLPasswordUserSalt". You should know what kind of algorithm is used to encrypt password on your postgres server and then use it... Follow this tutorial : http://wiki.galaxyproject.org/Admin/Config/Upload%20via%20FTP
If it works, then add 'salt' method if you wish, or other algorithm/method to encrypt password...
Regards
2013/7/22 TerryYeh@NARL <terryyeh@nchc.narl.org.tw>
Dear All,****
I am having a similar problem too. I followed the config setting provide by Mr. Perez and modified some possible error. I still cannot login my ftp server. Following is my proftpd.conf. Please help me to figure out the problem. Thanks a lot!!****
** **
# This is a basic ProFTPD configuration file (rename it to****
# 'proftpd.conf' for actual use. It establishes a single server****
# and a single anonymous login. It assumes that you have a user/group*** *
# "nobody" and "ftp" for normal operation and anon.****
** **
ServerName "ProFTPD Default Installation"****
ServerType standalone****
DefaultServer on****
** **
# Port 21 is the standard FTP port****
Port 2121****
** **
# Don't use IPv6 support by default.****
UseIPv6 off****
** **
# Umask 022 is a good standard umask to prevent new dirs and files****
# from being group and world writable.****
Umask 022****
** **
# To prevent DoS attacks, set the maximum number of child processes****
# to 30. If you need to allow more than 30 concurrent connections****
# at once, simply increase this value. Note that this ONLY works****
# in standalone mode, in inetd mode you should use an inetd server****
# that allows you to limit maximum number of processes per service****
# (such as xinetd).****
MaxInstances 30****
** **
# Set the user and group under which the server will run.****
User username****
Group groupname****
** **
** **
PassivePorts 40000 40999****
# To cause every FTP user to be "jailed" (chrooted) into their home****
# directory, uncomment this line.****
#DefaultRoot ~****
** **
CreateHome on dirmode 700****
** **
# Normally, we want files to be overwriteable.****
AllowOverwrite on****
** **
AllowStoreRestart on****
** **
** **
# Bar use of SITE CHMOD by default****
<Limit SITE_CHMOD>****
DenyAll****
</Limit>****
** **
<Limit RETR>****
DenyAll****
</Limit>****
** **
** **
<IfModule mod_dso.c>****
LoadModule mod_sql.c****
LoadModule mod_sql_passwd.c****
LoadModule mod_sql_postgres.c****
</IfModule>****
** **
SQLLogFile /pkg/biology/galaxy/proftpd/log/proftpd-sql-local****
** **
##****
** **
ServerLog /pkg/biology/galaxy/proftpd/var/proftpd-server.log****
SystemLog /pkg/biology/galaxy/proftpd/var/proftpd-system.log****
** **
** **
#AuthPAMConfig ftp****
#AuthOrder mod_auth_pam.c* mod_auth_unix.c****
** **
** **
# Do not authenticate against real (system) users****
AuthPAM off****
#AuthOrder mod_sql.c****
** **
** **
# Set up mod_sql_password - Galaxy passwords are stored as hex-encoded SHA1****
SQLPasswordEngine on****
SQLPasswordEncoding hex****
** **
# Set up mod_sql to authenticate against the Galaxy database****
SQLEngine on****
SQLBackend postgres****
SQLConnectInfo galaxy@localhost username password****
SQLAuthTypes SHA1 SHA256 pbkdf2****
SQLPasswordPBKDF2 SHA256 10000 24****
** **
SQLAuthenticate users****
** **
** **
# An empty directory in case chroot fails****
#SQLDefaultHomedir /var/opt/local/proftpd****
** **
# Define a custom query for lookup that returns a passwd-like entry. UID and GID should match your Galaxy user.****
** **
SQLUserInfo custom:/LookupGalaxyUser****
SQLPasswordUserSalt sql:/GetUserSalt****
** **
#SQLNamedQuery LookupGalaxyUser SELECT "email,password,'12345','1234','/home/username/galaxyftp/%U','/bin/bash' FROM galaxy_user WHERE email='%U'"****
SQLNamedQuery LookupGalaxyUser SELECT "email, (CASE WHEN substring(password from 1 for 6) = 'PBKDF2' THEN substring(password from 38 for 32) ELSE password END) AS password,'12345','1234','/home/username/galaxyftp/%U','/bin/bash' FROM galaxy_user WHERE email='%U'"****
SQLNamedQuery GetUserSalt SELECT "(CASE WHEN SUBSTRING (password from 1 for 6) = 'PBKDF2' THEN SUBSTRING (password from 21 for 16) END) AS salt FROM galaxy_user WHERE email='%U'"****
** **
** **
** **
I still get the message of authentication failed.****
2013-07-22 11:07:29,590 mod_sql/4.3[8124]: checking password using SQLAuthType 'sha1'****
2013-07-22 11:07:29,590 mod_sql/4.3[8124]: 'sha1' SQLAuthType handler reports failure****
2013-07-22 11:07:29,590 mod_sql/4.3[8124]: checking password using SQLAuthType 'sha256'****
2013-07-22 11:07:29,590 mod_sql/4.3[8124]: 'sha256' SQLAuthType handler reports failure****
2013-07-22 11:07:29,590 mod_sql/4.3[8124]: checking password using SQLAuthType 'pbkdf2'****
2013-07-22 11:07:29,619 mod_sql/4.3[8124]: 'pbkdf2' SQLAuthType handler reports failure****
** **
Any suggestion on my configuration file, Thanks.****
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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I noticed the errors in the SUBSTRING length too and I modified my configuration file accordingly but still not able to authenticate :( F. Il 22/07/13 05.40, TerryYeh@NARL ha scritto:
Dear All,
I am having a similar problem too. I followed the config setting provide by Mr. Perez and modified some possible error. I still cannot login my ftp server. Following is my proftpd.conf. Please help me to figure out the problem. Thanks a lot!!
# This is a basic ProFTPD configuration file (rename it to
# 'proftpd.conf' for actual use. It establishes a single server
# and a single anonymous login. It assumes that you have a user/group
# "nobody" and "ftp" for normal operation and anon.
ServerName "ProFTPD Default Installation"
ServerType standalone
DefaultServer on
# Port 21 is the standard FTP port
Port 2121
# Don't use IPv6 support by default.
UseIPv6 off
# Umask 022 is a good standard umask to prevent new dirs and files
# from being group and world writable.
Umask 022
# To prevent DoS attacks, set the maximum number of child processes
# to 30. If you need to allow more than 30 concurrent connections
# at once, simply increase this value. Note that this ONLY works
# in standalone mode, in inetd mode you should use an inetd server
# that allows you to limit maximum number of processes per service
# (such as xinetd).
MaxInstances 30
# Set the user and group under which the server will run.
User username
Group groupname
PassivePorts 40000 40999
# To cause every FTP user to be "jailed" (chrooted) into their home
# directory, uncomment this line.
#DefaultRoot ~
CreateHome on dirmode 700
# Normally, we want files to be overwriteable.
AllowOverwrite on
AllowStoreRestart on
# Bar use of SITE CHMOD by default
<Limit SITE_CHMOD>
DenyAll
</Limit>
<Limit RETR>
DenyAll
</Limit>
<IfModule mod_dso.c>
LoadModule mod_sql.c
LoadModule mod_sql_passwd.c
LoadModule mod_sql_postgres.c
</IfModule>
SQLLogFile /pkg/biology/galaxy/proftpd/log/proftpd-sql-local
##
ServerLog /pkg/biology/galaxy/proftpd/var/proftpd-server.log
SystemLog /pkg/biology/galaxy/proftpd/var/proftpd-system.log
#AuthPAMConfig ftp
#AuthOrder mod_auth_pam.c* mod_auth_unix.c
# Do not authenticate against real (system) users
AuthPAM off
#AuthOrder mod_sql.c
# Set up mod_sql_password - Galaxy passwords are stored as hex-encoded SHA1
SQLPasswordEngine on
SQLPasswordEncoding hex
# Set up mod_sql to authenticate against the Galaxy database
SQLEngine on
SQLBackend postgres
SQLConnectInfo galaxy@localhost username password
SQLAuthTypes SHA1 SHA256 pbkdf2
SQLPasswordPBKDF2 SHA256 10000 24
SQLAuthenticate users
# An empty directory in case chroot fails
#SQLDefaultHomedir /var/opt/local/proftpd
# Define a custom query for lookup that returns a passwd-like entry. UID and GID should match your Galaxy user.
SQLUserInfo custom:/LookupGalaxyUser
SQLPasswordUserSalt sql:/GetUserSalt
#SQLNamedQuery LookupGalaxyUser SELECT "email,password,'12345','1234','/home/username/galaxyftp/%U','/bin/bash' FROM galaxy_user WHERE email='%U'"
SQLNamedQuery LookupGalaxyUser SELECT "email, (CASE WHEN substring(password from 1 for 6) = 'PBKDF2' THEN substring(password from 38 for 32) ELSE password END) AS password,'12345','1234','/home/username/galaxyftp/%U','/bin/bash' FROM galaxy_user WHERE email='%U'"
SQLNamedQuery GetUserSalt SELECT "(CASE WHEN SUBSTRING (password from 1 for 6) = 'PBKDF2' THEN SUBSTRING (password from 21 for 16) END) AS salt FROM galaxy_user WHERE email='%U'"
I still get the message of authentication failed.
2013-07-22 11:07:29,590 mod_sql/4.3[8124]: checking password using SQLAuthType 'sha1'
2013-07-22 11:07:29,590 mod_sql/4.3[8124]: 'sha1' SQLAuthType handler reports failure
2013-07-22 11:07:29,590 mod_sql/4.3[8124]: checking password using SQLAuthType 'sha256'
2013-07-22 11:07:29,590 mod_sql/4.3[8124]: 'sha256' SQLAuthType handler reports failure
2013-07-22 11:07:29,590 mod_sql/4.3[8124]: checking password using SQLAuthType 'pbkdf2'
2013-07-22 11:07:29,619 mod_sql/4.3[8124]: 'pbkdf2' SQLAuthType handler reports failure
Any suggestion on my configuration file, Thanks.
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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-- ============================================ Federico Zambelli, Ph.D. Bioinformatics, Evolution and Comparative Genomics Lab Dept. of Biosciences University of Milano - Italy What can be asserted without proof can be dismissed without proof. ============================================
participants (3)
-
Federico Zambelli
-
Rémy Dernat
-
TerryYeh@NARL