Re: (null):// header in visualisation links (IGV etc.)
Dear Helena, thanks a lot, but I'm afraid this is not the case - 'RequestHeader' is set as described. It should be probably some trivial mistake hidden somewhere in the config files, which enable/disable a proper construction of URL text string. I was looking everywhere, but still no luck. best Lubos On 14/04/2021 10:40, Helena Rasche wrote:
Your proxy might not be forwarding the protocol if that's the issue you're seeing.
e.g. for apache, https://docs.galaxyproject.org/en/master/admin/apache.html
# Galaxy needs to know that this is https for generating URLs RequestHeader set X-URL-SCHEME"%{REQUEST_SCHEME}e" Hope that helps, Ciao
On 14/04/2021 10:38, klucar@embnet.sk wrote:
When clicking dataset visualisation links (UCSC, IGV, IGB, bam.iobio bam.iobio.io ...) on my galaxy installation [20.09] I'm always getting error:
Error: (null)://mygalaxy.mydomain.org/display_application/3d954174ae8d....
When manually changing the link from "(null)://" to "https://" the link is fully functional.
Other links from galaxy interface (download icon for any dataset) works without any problems.
Any help would be highly appreciated!
best
Lubos ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s
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-- Lubos Klucar Institute of Molecular Biology Slovak Academy of Science Dubravska cesta 21 845 51 Bratislava 45 Slovakia Tel.: +421 2 5930 7413 Fax.: +421 2 5930 7416
Lubos, do you have an opportunity to disable the proxy for a bit? So we can narrow down the suspects. Martin On Wed, Apr 14, 2021 at 11:22 AM Lubos Klucar <klucar@embnet.sk> wrote:
Dear Helena,
thanks a lot, but I'm afraid this is not the case - 'RequestHeader' is set as described.
It should be probably some trivial mistake hidden somewhere in the config files, which enable/disable a proper construction of URL text string. I was looking everywhere, but still no luck.
best
Lubos
Your proxy might not be forwarding the protocol if that's the issue you're seeing.
e.g. for apache, https://docs.galaxyproject.org/en/master/admin/apache.html
# Galaxy needs to know that this is https for generating URLs RequestHeader set X-URL-SCHEME"%{REQUEST_SCHEME}e" Hope that helps, Ciao
On 14/04/2021 10:38, klucar@embnet.sk wrote:
When clicking dataset visualisation links (UCSC, IGV, IGB, bam.iobio bam.iobio.io ...) on my galaxy installation [20.09] I'm always getting error:
Error: (null):// mygalaxy.mydomain.org/display_application/3d954174ae8d....
When manually changing the link from "(null)://" to "https://" the
On 14/04/2021 10:40, Helena Rasche wrote: link is fully functional.
Other links from galaxy interface (download icon for any dataset) works
without any problems.
Any help would be highly appreciated!
best
Lubos ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
--
Lubos Klucar
Institute of Molecular Biology Slovak Academy of Science Dubravska cesta 21 845 51 Bratislava 45 Slovakia
Tel.: +421 2 5930 7413 Fax.: +421 2 5930 7416 ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
Uff, I'll try that, though it will take some time since I have to figure out what in my apache config belongs to the proxying and what to the standard ssl virtualhost config... Lubos
I don't know your setup but maybe you could serve Galaxy on a different port without Apache/ssl to test. M. On Wed, Apr 14, 2021 at 11:58 AM <klucar@embnet.sk> wrote:
Uff, I'll try that, though it will take some time since I have to figure out what in my apache config belongs to the proxying and what to the standard ssl virtualhost config...
Lubos ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
Thanks for the hint! After disabling the proxy, the links are properly formatted (though IGV has reported some error after importing my example BAM file). Something is wrong with my proxy setup then? If needed, I happy to post (parts) of my config files. best Lubos On 14/04/2021 12:07, Martin Čech wrote:
I don't know your setup but maybe you could serve Galaxy on a different port without Apache/ssl to test. M.
On Wed, Apr 14, 2021 at 11:58 AM <klucar@embnet.sk <mailto:klucar@embnet.sk>> wrote:
Uff, I'll try that, though it will take some time since I have to figure out what in my apache config belongs to the proxying and what to the standard ssl virtualhost config...
Lubos ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/ <http://galaxyproject.org/search/>
participants (3)
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klucar＠embnet.sk -
Lubos Klucar
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Martin Čech