contributing patches to toolshed repos...
What’s the right way to contribute additions to other people’s repos? I have extended the picard wrappers to support the rna-seq metrics and downsample sam tools, but I don’t want to start a new repo just for these. I have attached the output from hg outgoing -p in case that’s useful
Hi Brad, unfortunately there is no standard way to contribute back to the repositories. Many of us have a github/bitbucket repositories with the wrappers. There are a few tickets to make that best practise, for example: https://trello.com/c/WdShmMld For the time being, please create a trello card at: https://trello.com/b/vHqpKpZF/galaxy-tool-shed and attach your patch. If you can't attach it, I will do it for you. Thanks a lot for your contribution! Bjoern
What’s the right way to contribute additions to other people’s repos?
I have extended the picard wrappers to support the rna-seq metrics and downsample sam tools, but I don’t want to start a new repo just for these.
I have attached the output from hg outgoing -p in case that’s useful
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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On Tue, Feb 25, 2014 at 4:53 PM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Brad,
unfortunately there is no standard way to contribute back to the repositories. Many of us have a github/bitbucket repositories with the wrappers.
There are a few tickets to make that best practise, for example: https://trello.com/c/WdShmMld
For the time being, please create a trello card at:
https://trello.com/b/vHqpKpZF/galaxy-tool-shed
and attach your patch. If you can't attach it, I will do it for you.
Thanks a lot for your contribution! Bjoern
I presume in this case the tools were from the Galaxy core team (and originally in Galaxy itself)? For the other case of community developed tools, each repository README file should link to a home page or repository - for example Bjoern and I both use GitHub for our tools. There is a Trello card open about making this more explicit on the Tool Shed: https://trello.com/c/g1dt8WhA/57-tool-shed-should-include-url-field-s-for-ho... Peter
Hi Bjorn: I don’t appear to have permission to create cards on the the galaxy-tool-shed board… I can create cards on the main board via http://galaxyproject.org/trello but I can’t find an analog for the toolshed board. Am I missing something? Brad -- Brad Langhorst, Ph.D. Applications and Product Development Scientist On Feb 25, 2014, at 11:53 AM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Brad,
unfortunately there is no standard way to contribute back to the repositories. Many of us have a github/bitbucket repositories with the wrappers.
There are a few tickets to make that best practise, for example: https://trello.com/c/WdShmMld
For the time being, please create a trello card at:
https://trello.com/b/vHqpKpZF/galaxy-tool-shed
and attach your patch. If you can't attach it, I will do it for you.
Thanks a lot for your contribution! Bjoern
What’s the right way to contribute additions to other people’s repos?
I have extended the picard wrappers to support the rna-seq metrics and downsample sam tools, but I don’t want to start a new repo just for these.
I have attached the output from hg outgoing -p in case that’s useful
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi Brad, interesting. I have CC'ed Greg, maybe he can get help us. In the meantime, please create it under the Galaxy ToolShed. It's probably not really defined in which board we should create Tool issues. Thanks! Bjoern
Hi Bjorn:
I don’t appear to have permission to create cards on the the galaxy-tool-shed board…
I can create cards on the main board via http://galaxyproject.org/trello but I can’t find an analog for the toolshed board.
Am I missing something?
Brad -- Brad Langhorst, Ph.D. Applications and Product Development Scientist
On Feb 25, 2014, at 11:53 AM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Brad,
unfortunately there is no standard way to contribute back to the repositories. Many of us have a github/bitbucket repositories with the wrappers.
There are a few tickets to make that best practise, for example: https://trello.com/c/WdShmMld
For the time being, please create a trello card at:
https://trello.com/b/vHqpKpZF/galaxy-tool-shed
and attach your patch. If you can't attach it, I will do it for you.
Thanks a lot for your contribution! Bjoern
What’s the right way to contribute additions to other people’s repos?
I have extended the picard wrappers to support the rna-seq metrics and downsample sam tools, but I don’t want to start a new repo just for these.
I have attached the output from hg outgoing -p in case that’s useful
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Hi Brad and Björn, Tickets can currently only be added to the Galaxy Trello Board, so please add them there and we'll move them to the Tool Shed Trello board whenever appropriate. Hopefully we'll soon have the ability for tickets to be submitted to multiple boards. Thanks very much! Greg Von Kuster On Feb 25, 2014, at 3:34 PM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Brad,
interesting. I have CC'ed Greg, maybe he can get help us. In the meantime, please create it under the Galaxy ToolShed. It's probably not really defined in which board we should create Tool issues.
Thanks! Bjoern
Hi Bjorn:
I don’t appear to have permission to create cards on the the galaxy-tool-shed board…
I can create cards on the main board via http://galaxyproject.org/trello but I can’t find an analog for the toolshed board.
Am I missing something?
Brad -- Brad Langhorst, Ph.D. Applications and Product Development Scientist
On Feb 25, 2014, at 11:53 AM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi Brad,
unfortunately there is no standard way to contribute back to the repositories. Many of us have a github/bitbucket repositories with the wrappers.
There are a few tickets to make that best practise, for example: https://trello.com/c/WdShmMld
For the time being, please create a trello card at:
https://trello.com/b/vHqpKpZF/galaxy-tool-shed
and attach your patch. If you can't attach it, I will do it for you.
Thanks a lot for your contribution! Bjoern
What’s the right way to contribute additions to other people’s repos?
I have extended the picard wrappers to support the rna-seq metrics and downsample sam tools, but I don’t want to start a new repo just for these.
I have attached the output from hg outgoing -p in case that’s useful
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
participants (4)
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Björn Grüning
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Greg Von Kuster
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Langhorst, Brad
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Peter Cock