toolshed and testtoolshed
Dear dev-list, Bjoern Gruening was so nice to provide a fix for one of the galaxy tools (openms_metaprosip). It seems that the fix found its way into the testtoolshed, but not the toolshed. So I was curious how the connection between these two tool sources works. - Is there a regular sync interval? Or does someone need to push a button to get a new version to the toolshed? - Are the versions (and the hashes) of the tools that find their way to the main toolshed identical? Then I could just switch the tool_shed_url in my tool_list.yml file when the desired version or a newer one appears in the main toolshed. - I guess its not a good idea (in general) to provide tools from the testtoolshed in a prodiction instance? Best, Matthias -- ------------------------------------------- Matthias Bernt Bioinformatics Service Molekulare Systembiologie (MOLSYB) Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ Helmholtz Centre for Environmental Research GmbH - UFZ Permoserstraße 15, 04318 Leipzig, Germany Phone +49 341 235 482296, m.bernt@ufz.de, www.ufz.de Sitz der Gesellschaft/Registered Office: Leipzig Registergericht/Registration Office: Amtsgericht Leipzig Handelsregister Nr./Trade Register Nr.: B 4703 Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig Wilfried Kraus Wissenschaftlicher Geschäftsführer/Scientific Managing Director: Prof. Dr. Dr. h.c. Georg Teutsch Administrative Geschäftsführerin/ Administrative Managing Director: Prof. Dr. Heike Graßmann -------------------------------------------
Matthias, - There is a regular sync for repositories owned or maintained by the IUC, but I don't think galaxyp has one. Your best bet would be to ask Björn (CC'd here) to update it in the main toolshed. - No, the hashes are specific to the toolshed, so unfortunately that solution is not a solution. - You guess correctly, the test toolshed is not recommended to rely on for tools. - Dave Bouvier http://galaxyproject.org http://usegalaxy.org On 08/23/2017 09:20 AM, Matthias Bernt wrote:
Dear dev-list,
Bjoern Gruening was so nice to provide a fix for one of the galaxy tools (openms_metaprosip). It seems that the fix found its way into the testtoolshed, but not the toolshed.
So I was curious how the connection between these two tool sources works.
- Is there a regular sync interval? Or does someone need to push a button to get a new version to the toolshed? - Are the versions (and the hashes) of the tools that find their way to the main toolshed identical? Then I could just switch the tool_shed_url in my tool_list.yml file when the desired version or a newer one appears in the main toolshed. - I guess its not a good idea (in general) to provide tools from the testtoolshed in a prodiction instance?
Best, Matthias
Hi Matthias, update of the MTS is triggerd. It can take a while, so many tools. In fact galaxyp uses the same mechanism as IUC, but the openms-tools are so many that the TS upload was cancelled by an Travis timeout. Sorry for the inconvenience. Tomorrow everything will be updated, Bjoern On 23.08.2017 15:28, Dave Bouvier wrote:
Matthias,
- There is a regular sync for repositories owned or maintained by the IUC, but I don't think galaxyp has one. Your best bet would be to ask Björn (CC'd here) to update it in the main toolshed. - No, the hashes are specific to the toolshed, so unfortunately that solution is not a solution. - You guess correctly, the test toolshed is not recommended to rely on for tools.
- Dave Bouvier http://galaxyproject.org http://usegalaxy.org
On 08/23/2017 09:20 AM, Matthias Bernt wrote:
Dear dev-list,
Bjoern Gruening was so nice to provide a fix for one of the galaxy tools (openms_metaprosip). It seems that the fix found its way into the testtoolshed, but not the toolshed.
So I was curious how the connection between these two tool sources works.
- Is there a regular sync interval? Or does someone need to push a button to get a new version to the toolshed? - Are the versions (and the hashes) of the tools that find their way to the main toolshed identical? Then I could just switch the tool_shed_url in my tool_list.yml file when the desired version or a newer one appears in the main toolshed. - I guess its not a good idea (in general) to provide tools from the testtoolshed in a prodiction instance?
Best, Matthias
participants (3)
-
Björn Grüning -
Dave Bouvier -
Matthias Bernt