Connection to PBS server XXX for state check failed
Dear All, I encountered exactly the same problem: http://osdir.lowified.com/galaxy-development-source-control/2012-07/msg00132... However my Galaxy instance completely crashes until restart, I am getting Proxy Error on HTTPd. Any help would be much appreciated, as we will have Galaxy workshop on Monday at our University. In logs I have: galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,306 connection to PBS server ce.reef.man.poznan.pl for state check failed galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,380 (441/13320109.ce.reef.man.poznan.pl) Skipping state check because PBS server connection failed galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,430 (444/13320114.ce.reef.man.poznan.pl) Skipping state check because PBS server connection failed +2+12+19+6galaxy+0+32+12+9job_state+1+0+0+02+172+14resources_used+1+0+0 +02+142+11exit_status+1+0+0+0+0 But the PBS server works fine. -- Pozdrawiam, -- Zuzanna K. Filutowska, HPC Systems Administrator Poznan Supercomputing and Networking Center Institute of Bioorganic Chemistry Polish Academy of Sciences Seize the day boys! Make your lifes extraordinary! --John Keating
Dnia 2015-09-09, śro o godzinie 18:29 +0200, Zuzanna K. Filutowska pisze:
Dear All,
I encountered exactly the same problem: http://osdir.lowified.com/galaxy-development-source-control/2012-07/msg00132...
However my Galaxy instance completely crashes until restart, I am getting Proxy Error on HTTPd. Any help would be much appreciated, as we will have Galaxy workshop on Monday at our University.
In logs I have: galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,306 connection to PBS server ce.reef.man.poznan.pl for state check failed galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,380 (441/13320109.ce.reef.man.poznan.pl) Skipping state check because PBS server connection failed galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,430 (444/13320114.ce.reef.man.poznan.pl) Skipping state check because PBS server connection failed +2+12+19+6galaxy+0+32+12+9job_state+1+0+0+02+172+14resources_used+1+0+0 +02+142+11exit_status+1+0+0+0+0
But the PBS server works fine.
I forgot to mention that I used python 2.7 and used pbs_python versions 4.3.5 and 4.4. -- Pozdrawiam, -- Zuzanna K. Filutowska www: http://platyna.org Trzeba mieć wytrwałość i wiarę w siebie, że jest się do czegoś zdolnym. -- Maria Curie-Skłodowska
Dnia 2015-09-09, śro o godzinie 18:29 +0200, Zuzanna K. Filutowska pisze:
Dear All,
I encountered exactly the same problem: http://osdir.lowified.com/galaxy-development-source-control/2012-07/msg00132...
However my Galaxy instance completely crashes until restart, I am getting Proxy Error on HTTPd. Any help would be much appreciated, as we will have Galaxy workshop on Monday at our University.
In logs I have: galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,306 connection to PBS server ce.reef.man.poznan.pl for state check failed galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,380 (441/13320109.ce.reef.man.poznan.pl) Skipping state check because PBS server connection failed galaxy.jobs.runners.pbs DEBUG 2015-09-09 15:04:21,430 (444/13320114.ce.reef.man.poznan.pl) Skipping state check because PBS server connection failed +2+12+19+6galaxy+0+32+12+9job_state+1+0+0+02+172+14resources_used+1+0+0 +02+142+11exit_status+1+0+0+0+0
But the PBS server works fine.
I forgot to mention that I used python 2.7 and used pbs_python versions 4.3.5 and 4.4. -- Pozdrawiam, -- Pozdrawiam, -- Zuzanna K. Filutowska, HPC Systems Administrator Poznan Supercomputing and Networking Center Institute of Bioorganic Chemistry Polish Academy of Sciences Seize the day boys! Make your lifes extraordinary! --John Keating
participants (2)
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Zuzanna K. Filutowska -
Zuzanna K. Filutowska