Hi, All of a sudden I am getting these errors when I submit a job in my Galaxy system. I can't recall I changed anything and I checked the universe file but nothing obvious there... Any ideas? Thanks Thon galaxy.jobs.runners.drmaa ERROR 2012-05-29 09:40:46,873 Uncaught exception queueing job Traceback (most recent call last): File "/home/tdeboer/code/galaxy-central/lib/galaxy/jobs/runners/drmaa.py", line 133, in run_next self.queue_job( obj ) File "/home/tdeboer/code/galaxy-central/lib/galaxy/jobs/runners/drmaa.py", line 213, in queue_job job_id = self.ds.runJob(jt) File "/home/tdeboer/code/galaxy-central/eggs/drmaa-0.4b3-py2.6.egg/drmaa/__init__.py", line 331, in runJob _h.c(_w.drmaa_run_job, jid, _ct.sizeof(jid), jobTemplate) File "/home/tdeboer/code/galaxy-central/eggs/drmaa-0.4b3-py2.6.egg/drmaa/helpers.py", line 213, in c return f(*(args + (error_buffer, sizeof(error_buffer)))) File "/home/tdeboer/code/galaxy-central/eggs/drmaa-0.4b3-py2.6.egg/drmaa/errors.py", line 90, in error_check raise _ERRORS[code-1]("code %s: %s" % (code, error_buffer.value)) DeniedByDrmException: code 17: ERROR! invalid option argument "----"
Never mind :)...I found my bug... I had inadvertently removed the comment line before some line that contains the 4 dashes :) problem solved... Thon On May 29, 2012, at 09:52 AM, Anthonius deBoer <thondeboer@me.com> wrote: Hi, All of a sudden I am getting these errors when I submit a job in my Galaxy system. I can't recall I changed anything and I checked the universe file but nothing obvious there... Any ideas? Thanks Thon galaxy.jobs.runners.drmaa ERROR 2012-05-29 09:40:46,873 Uncaught exception queueing job Traceback (most recent call last): File "/home/tdeboer/code/galaxy-central/lib/galaxy/jobs/runners/drmaa.py", line 133, in run_next self.queue_job( obj ) File "/home/tdeboer/code/galaxy-central/lib/galaxy/jobs/runners/drmaa.py", line 213, in queue_job job_id = self.ds.runJob(jt) File "/home/tdeboer/code/galaxy-central/eggs/drmaa-0.4b3-py2.6.egg/drmaa/__init__.py", line 331, in runJob _h.c(_w.drmaa_run_job, jid, _ct.sizeof(jid), jobTemplate) File "/home/tdeboer/code/galaxy-central/eggs/drmaa-0.4b3-py2.6.egg/drmaa/helpers.py", line 213, in c return f(*(args + (error_buffer, sizeof(error_buffer)))) File "/home/tdeboer/code/galaxy-central/eggs/drmaa-0.4b3-py2.6.egg/drmaa/errors.py", line 90, in error_check raise _ERRORS[code-1]("code %s: %s" % (code, error_buffer.value)) DeniedByDrmException: code 17: ERROR! invalid option argument "----" ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
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Anthonius deBoer