Hi list, I'm new to galaxy and I've a problem, when I try to upload any file from my computer I get this error: /home/fox/galaxy-central/lib/galaxy/__init__.py:31: UserWarning: Module pkg_resources was already imported from /home/fox/galaxy-central/lib/pkg_resources.pyc, but /usr/lib64/python2.6/site-packages is being added to sys.path __import__( "pkg_resources" ).declare_namespace( __name__ ) /home/fox/galaxy-central/lib/galaxy/__init__.py:31: UserWarning: Module site was already imported from /usr/lib64/python2.6/site.pyc, but /usr/lib64/python2.6/site-packages is being added to sys.path __import__( "pkg_resources" ).declare_namespace( __name__ ) ...even if i try to upload the test data included in the program tree. I think that maybe there's a problem with my python configuration. Any hint? -- f. "E' in un giorno di pioggia che ti ho conosciuta e il vento dell'ovest rideva gentile..." (Modena City Ramblers) http://fox.noblogs.org/
/fox/ wrote:
Hi list, I'm new to galaxy and I've a problem, when I try to upload any file from my computer I get this error:
/home/fox/galaxy-central/lib/galaxy/__init__.py:31: UserWarning: Module pkg_resources was already imported from /home/fox/galaxy-central/lib/pkg_resources.pyc, but /usr/lib64/python2.6/site-packages is being added to sys.path __import__( "pkg_resources" ).declare_namespace( __name__ ) /home/fox/galaxy-central/lib/galaxy/__init__.py:31: UserWarning: Module site was already imported from /usr/lib64/python2.6/site.pyc, but /usr/lib64/python2.6/site-packages is being added to sys.path __import__( "pkg_resources" ).declare_namespace( __name__ )
...even if i try to upload the test data included in the program tree.
I think that maybe there's a problem with my python configuration. Any hint?
Hi, I just noticed your question was never replied to. Sorry for missing this. Could you try setting up a Python virtualenv to run Galaxy in: http://pypi.python.org/pypi/virtualenv This should prevent any external conflicts. Thanks, --nate
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/fox/
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Nate Coraor