I'm trying to setup a virtualenv with JPype via tool_dependencies.xml. I've
verified that JPype is available from PyPI via pip, however, when Galaxy tries to install
the dependency, it's not finding a distribution.
JPype 0.5.4.2
https://pypi.python.org/pypi/JPype
Here is the <package> snippet from my tool_dependies.xml file:
<package name="jpype" version="0.5.4.2">
<install version="1.0">
<actions>
<action type="setup_virtualenv">JPype==0.5.4.2</action>
</actions>
</install>
<readme>
In order to install JPype, you must agree to the Apache License, Version 2.0, January
2004 (
http://www.apache.org/licenses/)
</readme>
</package>
Here is the error that I get when trying to install the dependency:
New python executable in
/home/mepcotterell/galaxy-tool-shed/tool-deps/jpype/0.5.4.2/mepcotterell/web_service_tools/65a0d7bb35d6/venv/bin/python
Installing setuptools............done.
Installing pip...............done.
Downloading/unpacking JPype==0.5.4.2 (from -r
/home/mepcotterell/galaxy-tool-shed/tool-deps/jpype/0.5.4.2/mepcotterell/web_service_tools/65a0d7bb35d6/requirements.txt
(line 1))
Could not find any downloads that satisfy the requirement JPype==0.5.4.2 (from -r
/home/mepcotterell/galaxy-tool-shed/tool-deps/jpype/0.5.4.2/mepcotterell/web_service_tools/65a0d7bb35d6/requirements.txt
(line 1))
No distributions at all found for JPype==0.5.4.2 (from -r
/home/mepcotterell/galaxy-tool-shed/tool-deps/jpype/0.5.4.2/mepcotterell/web_service_tools/65a0d7bb35d6/requirements.txt
(line 1))
Storing complete log in /home/mepcotterell/.pip/pip.log
Sincerely,
Michael E. Cotterell
Ph.D. Student in Computer Science, University of Georgia
Instructor of Record, Graduate RA & TA, University of Georgia
Faculty Liaison, CS Graduate Student Association, University of Georgia
mepcotterell(a)gmail.com (mailto:mepcotterell@gmail.com)
mepcott(a)uga.edu (mailto:mepcott@uga.edu)
mec(a)cs.uga.edu (mailto:mec@cs.uga.edu)
http://michaelcotterell.com/