Hi, There is a 'set_metadata_externally' setting in universe_wsgi.ini file. What is involved in this step? Is it run for every dataset/output being generated in the galaxy? -- Thanks, Shantanu.
Shantanu Pavgi wrote:
Hi,
There is a 'set_metadata_externally' setting in universe_wsgi.ini file. What is involved in this step? Is it run for every dataset/output being generated in the galaxy?
Hi Shantanu, Metadata is always detected/set on all job outputs. This setting simply controls whether the metadata setting occurs within the Galaxy server process or in a new process. It's highly recommended to always set this = True, and it will probably become the default in the future. --nate
-- Thanks, Shantanu. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
On Aug 30, 2011, at 9:16 AM, Nate Coraor wrote:
Shantanu Pavgi wrote:
Hi,
There is a 'set_metadata_externally' setting in universe_wsgi.ini file. What is involved in this step? Is it run for every dataset/output being generated in the galaxy?
Hi Shantanu,
Metadata is always detected/set on all job outputs. This setting simply controls whether the metadata setting occurs within the Galaxy server process or in a new process. It's highly recommended to always set this = True, and it will probably become the default in the future.
--nate
Thanks Nate. So is this something in the core galaxy code and independent of tool wrappers? -- Shantanu.
Shantanu Pavgi wrote:
On Aug 30, 2011, at 9:16 AM, Nate Coraor wrote:
Shantanu Pavgi wrote:
Hi,
There is a 'set_metadata_externally' setting in universe_wsgi.ini file. What is involved in this step? Is it run for every dataset/output being generated in the galaxy?
Hi Shantanu,
Metadata is always detected/set on all job outputs. This setting simply controls whether the metadata setting occurs within the Galaxy server process or in a new process. It's highly recommended to always set this = True, and it will probably become the default in the future.
--nate
Thanks Nate. So is this something in the core galaxy code and independent of tool wrappers?
Yes. It runs after the tool has finished executing.
-- Shantanu.
participants (2)
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Nate Coraor
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Shantanu Pavgi