super-FAQ? How to get the file from CLI from a library
Hi there, Suppose I have a data library with a file called "Foo"... How can I get the real file associated to "Foo"? I had to copy it somewhere else (without using the web interface). I guess a simple database query is enough... isn't it? Thanks d /* Davide Cittaro Cogentech - Consortium for Genomic Technologies via adamello, 16 20139 Milano Italy tel.: +39(02)574303007 e-mail: davide.cittaro@ifom-ieo-campus.it */
Davide Cittaro wrote:
Hi there, Suppose I have a data library with a file called "Foo"... How can I get the real file associated to "Foo"? I had to copy it somewhere else (without using the web interface). I guess a simple database query is enough... isn't it?
Hi Davide, I just committed a "file path" field which reveals the full path to the file on the admin side library dataset info page in changeset 4256:215fccaa5ba2. Hopefully this helps. --nate
Thanks
d /* Davide Cittaro
Cogentech - Consortium for Genomic Technologies via adamello, 16 20139 Milano Italy
tel.: +39(02)574303007 e-mail: davide.cittaro@ifom-ieo-campus.it <mailto:davide.cittaro@ifom-ieo-campus.it> */
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On Sep 7, 2010, at 3:48 PM, Nate Coraor wrote:
Davide Cittaro wrote:
Hi there, Suppose I have a data library with a file called "Foo"... How can I get the real file associated to "Foo"? I had to copy it somewhere else (without using the web interface). I guess a simple database query is enough... isn't it?
Hi Davide,
I just committed a "file path" field which reveals the full path to the file on the admin side library dataset info page in changeset 4256:215fccaa5ba2. Hopefully this helps.
Great! I'm going to test this ASAP! d
--nate
Thanks d /* Davide Cittaro Cogentech - Consortium for Genomic Technologies via adamello, 16 20139 Milano Italy tel.: +39(02)574303007 e-mail: davide.cittaro@ifom-ieo-campus.it <mailto:davide.cittaro@ifom-ieo-campus.it> */ ------------------------------------------------------------------------ _______________________________________________ galaxy-dev mailing list galaxy-dev@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-dev
/* Davide Cittaro Cogentech - Consortium for Genomic Technologies via adamello, 16 20139 Milano Italy tel.: +39(02)574303007 e-mail: davide.cittaro@ifom-ieo-campus.it */
participants (2)
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Davide Cittaro -
Nate Coraor