Using operations on multiple datasets
Sorry for the crosspost to Biostars, but I didn't get a response, so I thought I'd post here: I just noticed that Galaxy allows creation of lists of datasets by clicking on the "Operations on multiple datasets" in the history panel. How does one use this with a custom tool (e.g. what does one put between the <input> </input> tags). Is the list treated as a text file with a list of each file? I couldn't find any examples or documentation online. I'd appreciate it if someone could point me in the right direction. Thanks!
Hi, Am 05.07.2016 um 23:18 schrieb D K:
Sorry for the crosspost to Biostars, but I didn't get a response, so I thought I'd post here:
I just noticed that Galaxy allows creation of lists of datasets by clicking on the "Operations on multiple datasets" in the history panel. How does one use this with a custom tool (e.g. what does one put between the <input> </input> tags). Is the list treated as a text file with a list of each file? I couldn't find any examples or documentation online. I'd appreciate it if someone could point me in the right direction.
You can not use this feature in a tool, it's pure UI. But you can use multiple="True" https://github.com/galaxyproject/tools-iuc/blob/180a403421967d36f995941b1a45... maybe this helps? Cheers, Bjoern
Thanks!
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In addition to Bjoern’s response, tools written to take a single input like this: <command> <![CDATA[ python $__tool_directory__/my_tool.py --input "$input” … ]]> </command> will automatically accept a dataset collection, both in workflows and in the tool form UI.
On Jul 5, 2016, at 5:25 PM, Björn Grüning <bjoern.gruening@gmail.com> wrote:
Hi,
Am 05.07.2016 um 23:18 schrieb D K:
Sorry for the crosspost to Biostars, but I didn't get a response, so I thought I'd post here:
I just noticed that Galaxy allows creation of lists of datasets by clicking on the "Operations on multiple datasets" in the history panel. How does one use this with a custom tool (e.g. what does one put between the <input> </input> tags). Is the list treated as a text file with a list of each file? I couldn't find any examples or documentation online. I'd appreciate it if someone could point me in the right direction.
You can not use this feature in a tool, it's pure UI. But you can use multiple="True"
https://github.com/galaxyproject/tools-iuc/blob/180a403421967d36f995941b1a45...
maybe this helps? Cheers, Bjoern
Thanks!
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/
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participants (3)
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Björn Grüning -
D K -
Von Kuster, Greg