FYI: I patched the wrapper to offer all the weblogo Y axis scale options and an additional test to central #5766 and some additional dependency error reporting in #5772 - latest wrapper version is 0.4 On Fri, Jul 1, 2011 at 8:28 AM, Ross <ross.lazarus@gmail.com> wrote:

Thanks - code to accompany good suggestions is always appreciated :)

I'll write a test and get a patched version on test as soon as I get some time - travelling all day today - will let you know when it's done

On Fri, Jul 1, 2011 at 7:20 AM, Assaf Gordon <gordon@cshl.edu> wrote:

...

Hello Ross and Galaxy team,

May I suggest this small patch, that enables WebLogo to plot either Entropy bits (the current default) or just nucleotides probabilities ? It uses the standard "-U" parameter of "weblogo3".

-gordon

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-- Ross Lazarus MBBS MPH; Associate Professor, Harvard Medical School; Director of Bioinformatics, Channing Lab; Tel: +1 617 505 4850; Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444;

-- Ross Lazarus MBBS MPH; Associate Professor, Harvard Medical School; Director of Bioinformatics, Channing Lab; Tel: +1 617 505 4850; Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444;