Hi Miuki,

There's definitely a bit of out of date info on Torque integration. Here's what I've done most recently.

Torque Which version do you have? Try:

rpm -qi torque Name : torque Relocations: /usr Version : 6.0.2 Vendor: redhat Release : 1.adaptive.el6 Build Date: Mon 05 Dec 2016 09:33:30 PM EST

~ If that doesn't work, do: ~ /usr/bin/qsub --version Version: 6.0.2

Where are your Torque libraries? which qsub /usr/bin

ldd /usr/bin/qsub libtorque.so.2 => /usr/lib64/libtorque.so.2 (0x00007f58b8f18000)

~ or ~ rpm -ql torque | grep ".so" /usr/lib64/libtorque.so rpm -ql torque-drmaa | grep ".so" /usr/lib64/libdrmaa.so

Environment variables Use the information gained above to set your environment to point to the right libraries export DRMAA_LIBRARY_PATH=/usr/lib64/libdrmaa.so export LD_LIBRARY_PATH=/usr/lib64:LD_LIBRARY_PATH export LIBTORQUE_DIR=/usr/lib64

I think the libdrmaa.so is working ok now for Torque 6, so I'll use it instead of getting another libdrmaa.

Python This will be a lot easier on you if you are using a virtualenv for Galaxy. This is the default behavior on recent Galaxy builds. To use, make sure your above environment variables are set, and then do: cd galaxy source .venv/bin/activate pip install drmaa-python deactivate

Now give Galaxy a kick and see if it works!

-Carrie

From: "Yip, Miu ki" <myip@cshl.edumailto:myip@cshl.edu> Date: Monday, February 27, 2017 at 12:26 PM To: "galaxy-dev@lists.galaxyproject.orgmailto:galaxy-dev@lists.galaxyproject.org" <galaxy-dev@lists.galaxyproject.orgmailto:galaxy-dev@lists.galaxyproject.org> Subject: [galaxy-dev] Galaxy and Torque

Hi all,

Is Torque still supported as a resource manager?

This page ( https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster ) mentioned the usage of Torque and how to set it up. However, the setup instructions refer to a /script/scramble.py file which I assume interfaces with eggs. If I recall correctly, eggs were upgraded to wheels. Does this mean there are upgraded scripts in place of scramble.py and the eggs.ini?

I saw this page ( https://biostar.usegalaxy.org/p/20470/ ) and it looks like nobody has a solution to this.

Thanks!