Is "auto-delete" feature available in Galaxy now? Or Is there an alternate way
to delete (or flag to delete) a dataset automatically after a workflow?
Best
Raj
-----Original Message-----
From: galaxy-dev-bounces(a)lists.bx.psu.edu [mailto:galaxy-dev-bounces@lists.bx.psu.edu] On
Behalf Of Praveen Raj Somarajan
Sent: Wednesday, April 04, 2012 5:25 PM
To: Peter Cock
Cc: galaxy-dev(a)lists.bx.psu.edu
Subject: Re: [galaxy-dev] Auto delete dataset after workflow run?
exactly, something similar to "auto-hide" feature. This would be a nice option
to have, as the intermediate files consume huge amount of memory, especially in case of
NGS analysis.
- Raj
-----Original Message-----
From: Peter Cock [mailto:p.j.a.cock@googlemail.com]
Sent: Wednesday, April 04, 2012 5:09 PM
To: Praveen Raj Somarajan
Cc: galaxy-dev(a)lists.bx.psu.edu
Subject: Re: [galaxy-dev] Auto delete dataset after workflow run?
On Wed, Apr 4, 2012 at 12:30 PM, Praveen Raj Somarajan
<Praveen.s(a)ocimumbio.com> wrote:
Hello All,
Is there a way to set "auto delete" some datafiles at the end of workflow
run? I'm asking this because it is sometimes useful to delete some outputs
(say intermediate files, .logs, etc), for example "auto delete" .sam file
after executing sam-to-bam tool, which would free-up lot of space. This is
especially useful when work with large number of samples.
Look forward to any comments/suggestions.
Best,
Raj.
You're not the first to ask, e.g.
http://lists.bx.psu.edu/pipermail/galaxy-dev/2011-September/006801.html
It would be quite a popular feature I think - perhaps replacing the
current "auto hide" feature in workflows with "auto delete" or is
that
too drastic?
Peter
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