ABySS genome assembler integration into Galaxy
Colleagues, Rumor has it that some developer in the Galaxy community is already integrating the ABySS genome assembler ( http://www.bcgsc.ca/platform/bioinfo/software/abyss/) into Galaxy. Does anyone have any details about this? Cheers -- *Richard Bruskiewich, PhD* Senior Scientist, Computational and Systems Biology Applications Team for Computational Genomics T.T. Chang Genetic Resources Center International Rice Research Institute
Yes, this is something we've been working on. We will have it enabled for the galaxy cloud instances when we update them next week. At this time I don't believe we're planning on enabling it on the main galaxy instance right away, but the wrappers will definitely be available for anyone to use on their own instance. -Dannon On Nov 22, 2010, at 11:05 PM, Richard Bruskiewich wrote:
Colleagues,
Rumor has it that some developer in the Galaxy community is already integrating the ABySS genome assembler (http://www.bcgsc.ca/platform/bioinfo/software/abyss/) into Galaxy.
Does anyone have any details about this?
Cheers -- Richard Bruskiewich, PhD Senior Scientist, Computational and Systems Biology Applications Team for Computational Genomics T.T. Chang Genetic Resources Center International Rice Research Institute
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participants (2)
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Dannon Baker
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Richard Bruskiewich