Hello Valeria,

The setting for tool_dependency_dir must be an actual path on your local file system, something like:

tool_dependency_dir = ../tool_dependencies

Make sure that you set the location to a place that is safe for installing files.

Greg Von Kuster

On Dec 4, 2013, at 3:09 PM, Valeria Parreira Pinto vparreir@uoguelph.ca wrote:

Hi

I am having problems to install a tool from tool shed named S_MART (attached paper) on my local Galaxy. The reason to install S_MART is to use DETR'PROK (attached paper) in Galaxy. The first time, I got a warning before installing S-MART saying: " set the value of your tool_dependency_dir setting in universe_wsgi_ini and restart before installing"

In the universe_wsgi_ini:

Path to the directory in which managed tool dependencies are placed. To use # the dependency system, see the documentation at: # http://wiki.g2.bx.psu.edu/Admin/Config/Tool%20Dependencies #tool_dependency_dir = None tool_dependency_dir = tool_dependency_dir

I have follow the instructions of the Matthias Zytnicki (paper's author). I did not work, still with error, however now it does not mention where or what to do!!

Could you please let me know what would be the problem? and How to fix it? Thanks in advance, Valeria

---

Valeria Parreira, Ph.D Adjunct Faculty Department of Pathobiology OVC, University of Guelph, Guelph, Ontario, N1G 2W1, Canada Tel: +1 (519) 824-4120 - Ext. 54717(lab) and 54679 (office) vparreir@uoguelph.ca

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