Hi, I'm experiencing an error while trying to upload bam files from my local instance of galaxy to ucsc. In particular the bam tracks appear in the ucsc genome browser, but instead of data I got this error: End of file reading 1 bytes (got 0) I searched the mailing list, but the only hint I get is in the following mail, which however does not provide a solution for the problem, because I don't know how to enable the byterange (and whatelse) support for my server (in apache?). https://lists.soe.ucsc.edu/pipermail/genome/2011-July/026420.html Any ideas of what I should do? Maybe it can be helpful to provide a hint in the apache configuration howto. I.
Hi Ivan, For the displays at external resources that rely on partial gets/responses (e.g. bams, bigWig, etc), Galaxy will need to be put behind a proxy, e.g. nginx with x_accel_redirect or apache with xsendfile. Please see the production server instructions on the wiki for information on configuring Galaxy behind a proxy. Thanks for using Galaxy, Dan On Nov 19, 2011, at 10:39 AM, Ivan Merelli wrote:
Hi,
I'm experiencing an error while trying to upload bam files from my local instance of galaxy to ucsc.
In particular the bam tracks appear in the ucsc genome browser, but instead of data I got this error:
End of file reading 1 bytes (got 0)
I searched the mailing list, but the only hint I get is in the following mail, which however does not provide a solution for the problem, because I don't know how to enable the byterange (and whatelse) support for my server (in apache?).
https://lists.soe.ucsc.edu/pipermail/genome/2011-July/026420.html
Any ideas of what I should do? Maybe it can be helpful to provide a hint in the apache configuration howto.
I.
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (2)
-
Daniel Blankenberg -
Ivan Merelli