11:55 a.m.
Hi all, I'm running galaxy behind apache proxy.
I was manually changing the data type for some dataset from bed to bedgraph and galaxy was
stuck... after that I got this error in the admin frame:
Proxy Error
The proxy server received an invalid response from an upstream server.
The proxy server could not handle the request POST /library_common/ldda_edit_info.
Reason: Error reading from remote server
Apache/2.2.16 (Unix) Server at host001.instruments.ifom-ieo-campus.it Port 8080
Any hint?
d
/*
Davide Cittaro
Cogentech - Consortium for Genomic Technologies
via adamello, 16
20139 Milano
Italy
tel.: +39(02)574303007
e-mail: davide.cittaro(a)ifom-ieo-campus.it
*/
12:04 p.m.
On Sep 28, 2010, at 1:55 PM, Davide Cittaro wrote:
Hi all, I'm running galaxy behind apache proxy.
I was manually changing the data type for some dataset from bed to bedgraph and galaxy
was stuck... after that I got this error in the admin frame:
I'm trying to set the new type after importing into an history. Apparently it takes
ages to set metadata... could this be the reason for the error?
d
/*
Davide Cittaro
Cogentech - Consortium for Genomic Technologies
via adamello, 16
20139 Milano
Italy
tel.: +39(02)574303007
e-mail: davide.cittaro(a)ifom-ieo-campus.it
*/
3:49 p.m.
Davide Cittaro wrote:
On Sep 28, 2010, at 1:55 PM, Davide Cittaro wrote:
> Hi all, I'm running galaxy behind apache proxy.
> I was manually changing the data type for some dataset from bed to
> bedgraph and galaxy was stuck... after that I got this error in the
> admin frame:
>
I'm trying to set the new type after importing into an history.
Apparently it takes ages to set metadata... could this be the reason for
the error?
Yes. Are you setting metadata externally?
set_metadata_externally = True
I'd also recommend setting:
retry_metadata_internally = False
--nate
d
/*
Davide Cittaro
Cogentech - Consortium for Genomic Technologies
via adamello, 16
20139 Milano
Italy
tel.: +39(02)574303007
e-mail: davide.cittaro(a)ifom-ieo-campus.it
<mailto:davide.cittaro@ifom-ieo-campus.it>
*/
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6:48 p.m.
On Sep 30, 2010, at 5:49 PM, Nate Coraor wrote:
Davide Cittaro wrote:
> On Sep 28, 2010, at 1:55 PM, Davide Cittaro wrote:
>> Hi all, I'm running galaxy behind apache proxy.
>> I was manually changing the data type for some dataset from bed to bedgraph and
galaxy was stuck... after that I got this error in the admin frame:
>>
> I'm trying to set the new type after importing into an history. Apparently it
takes ages to set metadata... could this be the reason for the error?
Yes. Are you setting metadata externally?
set_metadata_externally = True
Yes, I am
$ grep set_metadata *.ini
universe_wsgi.ini:set_metadata_externally = True
universe_wsgi.runner.ini:set_metadata_externally = True
universe_wsgi.webapp.ini:set_metadata_externally = True
I'd also recommend setting:
retry_metadata_internally = False
I'll try this. Just a quick question: is this a set for the runner.ini or webapp.ini?
--nate
> d
> /*
> Davide Cittaro
> Cogentech - Consortium for Genomic Technologies
> via adamello, 16
> 20139 Milano
> Italy
> tel.: +39(02)574303007
> e-mail: davide.cittaro(a)ifom-ieo-campus.it
<mailto:davide.cittaro@ifom-ieo-campus.it>
> */
> ------------------------------------------------------------------------
> _______________________________________________
> galaxy-dev mailing list
> galaxy-dev(a)lists.bx.psu.edu
> http://lists.bx.psu.edu/listinfo/galaxy-dev
/*
Davide Cittaro
Cogentech - Consortium for Genomic Technologies
via adamello, 16
20139 Milano
Italy
tel.: +39(02)574303007
e-mail: davide.cittaro(a)ifom-ieo-campus.it
*/
7:28 p.m.
Davide Cittaro wrote:
On Sep 30, 2010, at 5:49 PM, Nate Coraor wrote:
> Davide Cittaro wrote:
>> On Sep 28, 2010, at 1:55 PM, Davide Cittaro wrote:
>>> Hi all, I'm running galaxy behind apache proxy.
>>> I was manually changing the data type for some dataset from bed to
>>> bedgraph and galaxy was stuck... after that I got this error in the
>>> admin frame:
>>>
>> I'm trying to set the new type after importing into an history.
>> Apparently it takes ages to set metadata... could this be the reason
>> for the error?
>
> Yes. Are you setting metadata externally?
>
> set_metadata_externally = True
>
Yes, I am
$ grep set_metadata *.ini
universe_wsgi.ini:set_metadata_externally = True
universe_wsgi.runner.ini:set_metadata_externally = True
universe_wsgi.webapp.ini:set_metadata_externally = True
> I'd also recommend setting:
>
> retry_metadata_internally = False
>
I'll try this. Just a quick question: is this a set for the runner.ini
or webapp.ini?
Both. In the runner it controls whether the metadata is retried
internally. In the webapp it controls whether the user is given the
option to retry setting metadata.
--nate
> --nate
>
>> d
>> /*
>> Davide Cittaro
>> Cogentech - Consortium for Genomic Technologies
>> via adamello, 16
>> 20139 Milano
>> Italy
>> tel.: +39(02)574303007
>> e-mail: davide.cittaro(a)ifom-ieo-campus.it
>> <mailto:davide.cittaro@ifom-ieo-campus.it>
>> <mailto:davide.cittaro@ifom-ieo-campus.it>
>> */
>> ------------------------------------------------------------------------
>> _______________________________________________
>> galaxy-dev mailing list
>> galaxy-dev(a)lists.bx.psu.edu <mailto:galaxy-dev@lists.bx.psu.edu>
>> http://lists.bx.psu.edu/listinfo/galaxy-dev
>
/*
Davide Cittaro
Cogentech - Consortium for Genomic Technologies
via adamello, 16
20139 Milano
Italy
tel.: +39(02)574303007
e-mail: davide.cittaro(a)ifom-ieo-campus.it
<mailto:davide.cittaro@ifom-ieo-campus.it>
*/
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