On Feb 26, 2013, at 8:23 AM, Quang Trinh wrote:

Hi Greg, Works. Thanks.

Is it possible to create a branch call 'latest_stable', which always points to the latest stable release so then on our end, we can always do 'hg update latest_stable' in one of our scripts to update rather using 'release_2013.02.08'?

Hi Quang, Once your repository is on the stable branch (you can check using `hg branch`, then `hg pull` followed by `hg update` will always get you the latest stable changes. This may include some changes committed after the release, however. --nate

Thanks,

On Mon, Feb 25, 2013 at 8:52 AM, Greg Von Kuster <greg@bx.psu.edu> wrote:

...

Hello Quang,

It looks like you are attempting to install from the main Galaxy tool shed into a Galaxy instance that is older than the December 20, 2012 Galaxy release. You have to be using that release or newer (up to the current stable branch) to use the main Galaxy tool shed.

To get the latest stable branch, you can do this:

hg update release_2013.02.08

Then to get all updates to the stable branch, you can:

hg pull -b stable https://bitbucket.org/galaxy/galaxy-central

followed by:

hg update

Greg Von Kuster

On Feb 25, 2013, at 8:35 AM, Quang Trinh wrote:

Hi dev, I am trying to install bwa from toolshed on my Galaxy instance on Amazon just now and get this error ( please see below). Installing bwa worked for me before.

URL: http://xxx.xxx.xxx.xxx/admin_toolshed/prepare_for_install?tool_shed_url=http://toolshed.g2.bx.psu.edu/&repository_ids=25bdd3c7f0d57b06&changeset_revisions=ffa8aaa14f7c Module paste.exceptions.errormiddleware:143 in __call__

app_iter = self.application(environ, start_response)

Module paste.debug.prints:98 in __call__

environ, self.app)

Module paste.wsgilib:539 in intercept_output

app_iter = application(environ, replacement_start_response)

Module paste.recursive:80 in __call__

return self.application(environ, start_response)

Module paste.httpexceptions:632 in __call__

return self.application(environ, start_response)

Module galaxy.web.framework.base:160 in __call__

body = method( trans, **kwargs )

Module galaxy.web.framework:206 in decorator

return func( self, trans, *args, **kwargs )

Module galaxy.webapps.galaxy.controllers.admin_toolshed:1199 in prepare_for_install

description, repository_clone_url, changeset_revision, ctx_rev, repository_owner, tool_dependencies = repo_info_tuple

ValueError: too many values to unpack

Thanks,

Q ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:

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___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:

http://lists.bx.psu.edu/