Hej Jelle, I also thought of setting it up again from scratch... @Marius I will check again the hg diff. The update with hg update worked fine as far as I can see. So I'm not in a big hurry to change to git. Cheers Jochen On 21.07.2015 13:27, Jelle Scholtalbers wrote:

Hi Jochen,

I recently took a probably more labour intensive approach.

# backup! # mv prev-installation to somewhere else # git clone to old-location # git checkout -b master origin/master # and copy over every config, tool xml, tool dependency directory, tool-data loc files from the prev-installation to the new git one # add your own code changes if you have any that you want to keep # ./run.sh or manage_db.sh upgrade # check log and probably copy some more missing files

The upside for me was that I could finally remove all the junk that our installation has been collecting for the last couple of year.

Cheers, Jelle

On Tue, Jul 21, 2015 at 12:45 PM, Jochen Bick <jochen.bick@usys.ethz.ch> wrote:

...

Thanks Marius,

it does not look like it's working for me. There are to many changes in git diff...

the git pull and cat local_changes.diff |patch -p1 -R gives me an endless list of differences.

Cheers Jochen

On 21.07.2015 11:41, Marius van den Beek wrote:

...

Hi Jochen,

I recently did this. Instructions are here: https://wiki.galaxyproject.org/Develop/SourceCode

This has worked for me: (~/galaxy-dist is my production galaxy dir) cd ~ git clone https://github.com/galaxyproject/galaxy.git cd galaxy git reset --hard 3f1cec451f6dadee52a70a14fc6f6899f7aacdae cd ~/galaxy-dist hg update 17115 mv .hg .hg_backup cp -R ~/galaxy/.git . git pull (at this point I got a merge error!) so I did: git diff > local_changes.diff cat local_changes.diff |patch -p1 -R git pull git checkout release_15.05

Best, Marius

On 21 July 2015 at 11:36, Jochen Bick <jochen.bick@usys.ethz.ch> wrote:

...

Hi,

is it possible to change from bitbucket to git? So I would like future-update my galaxy from git instead from bitbucket.

Cheers Jochen

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-- ETH Zurich *Jochen Bick* Animal Physiology Institute of Agricultural Sciences Postal address: Universitätstrasse 2 / LFW B 58.1 Office: Tannenstrasse 1 / TAN D 6.2 8092 Zurich, Switzerland Phone +41 44 632 28 25 jochen.bick@usys.ethz.ch <mailto:jochen.bick@usys.ethz.ch> www.ap.ethz.ch