Hej Jelle,
I also thought of setting it up again from scratch...
@Marius I will check again the hg diff. The update with hg update worked
fine as far as I can see. So I'm not in a big hurry to change to git.
Cheers Jochen
On 21.07.2015 13:27, Jelle Scholtalbers wrote:
Hi Jochen,
I recently took a probably more labour intensive approach.
# backup!
# mv prev-installation to somewhere else
# git clone to old-location
# git checkout -b master origin/master
# and copy over every config, tool xml, tool dependency directory,
tool-data loc files from the prev-installation to the new git one
# add your own code changes if you have any that you want to keep
# ./run.sh or manage_db.sh upgrade
# check log and probably copy some more missing files
The upside for me was that I could finally remove all the junk that our
installation has been collecting for the last couple of year.
Cheers,
Jelle
On Tue, Jul 21, 2015 at 12:45 PM, Jochen Bick <jochen.bick(a)usys.ethz.ch>
wrote:
> Thanks Marius,
>
> it does not look like it's working for me. There are to many changes in
> git diff...
>
> the git pull and cat local_changes.diff |patch -p1 -R gives me an
> endless list of differences.
>
> Cheers Jochen
>
> On 21.07.2015 11:41, Marius van den Beek wrote:
>> Hi Jochen,
>>
>> I recently did this. Instructions are here:
>>
https://wiki.galaxyproject.org/Develop/SourceCode
>>
>> This has worked for me:
>> (~/galaxy-dist is my production galaxy dir)
>> cd ~
>> git clone
https://github.com/galaxyproject/galaxy.git
>> cd galaxy
>> git reset --hard 3f1cec451f6dadee52a70a14fc6f6899f7aacdae
>> cd ~/galaxy-dist
>> hg update 17115
>> mv .hg .hg_backup
>> cp -R ~/galaxy/.git .
>> git pull (at this point I got a merge error!)
>> so I did:
>> git diff > local_changes.diff
>> cat local_changes.diff |patch -p1 -R
>> git pull
>> git checkout release_15.05
>>
>> Best,
>> Marius
>>
>> On 21 July 2015 at 11:36, Jochen Bick <jochen.bick(a)usys.ethz.ch> wrote:
>>
>>> Hi,
>>>
>>> is it possible to change from bitbucket to git? So I would like
>>> future-update my galaxy from git instead from bitbucket.
>>>
>>> Cheers Jochen
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--
ETH Zurich
*Jochen Bick*
Animal Physiology
Institute of Agricultural Sciences
Postal address: Universitätstrasse 2 / LFW B 58.1
Office: Tannenstrasse 1 / TAN D 6.2
8092 Zurich, Switzerland
Phone +41 44 632 28 25
jochen.bick(a)usys.ethz.ch <mailto:jochen.bick@usys.ethz.ch>