New subject: Galaxy stable not working on MAC OSX, but default is OK

12 Apr 2014

      Hi,

Seems I have some problems to run Galaxy stable. Here is the output I
receive when running run.sh.

Thanks for your help, Bernardo

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Bernardos-MacBook-Pro:galaxy-central bernardo$ hg update stable
622 files updated, 0 files merged, 158 files removed, 0 files unresolved
Bernardos-MacBook-Pro:galaxy-central bernardo$ sh run.sh
Traceback (most recent call last):
  File "./scripts/paster.py", line 33, in <module>
    serve.run()
  File
"/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/serve.py", line
1049, in run
    invoke(command, command_name, options, args[1:])
  File
"/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/serve.py", line
1055, in invoke
    exit_code = runner.run(args)
  File
"/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/serve.py", line
220, in run
    result = self.command()
  File
"/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/serve.py", line
643, in command
    app = loadapp( app_spec, name=app_name, relative_to=base,
global_conf=vars)
  File
"/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py",
line 350, in loadapp
    return loadobj(APP, uri, name=name, **kw)
  File
"/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py",
line 374, in loadobj
    global_conf=global_conf)
  File
"/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py",
line 399, in loadcontext
    global_conf=global_conf)
  File
"/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py",
line 423, in _loadconfig
    return loader.get_context(object_type, name, global_conf)
  File
"/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py",
line 561, in get_context
    section)
  File
"/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py",
line 620, in _context_from_explicit
    value = import_string(found_expr)
  File
"/Users/bernardo/galaxy-central/lib/galaxy/util/pastescript/loadwsgi.py",
line 125, in import_string
    return pkg_resources.EntryPoint.parse("x=" + s).load(False)
  File "/Users/bernardo/galaxy-central/lib/pkg_resources.py", line 1954, in
load
    entry = __import__(self.module_name, globals(),globals(), ['__name__'])
  File "/Users/bernardo/galaxy-central/lib/galaxy/web/__init__.py", line 4,
in <module>
    from framework import expose
  File
"/Users/bernardo/galaxy-central/lib/galaxy/web/framework/__init__.py", line
41, in <module>
    from babel.support import Translations
  File
"/Users/bernardo/galaxy-central/eggs/Babel-0.9.4-py2.7.egg/babel/support.py",
line 29, in <module>
    from babel.dates import format_date, format_datetime, format_time,
LC_TIME
  File
"/Users/bernardo/galaxy-central/eggs/Babel-0.9.4-py2.7.egg/babel/dates.py",
line 34, in <module>
    LC_TIME = default_locale('LC_TIME')
  File
"/Users/bernardo/galaxy-central/eggs/Babel-0.9.4-py2.7.egg/babel/core.py",
line 642, in default_locale
    return '_'.join(filter(None, parse_locale(locale)))
  File
"/Users/bernardo/galaxy-central/eggs/Babel-0.9.4-py2.7.egg/babel/core.py",
line 763, in parse_locale
    raise ValueError('expected only letters, got %r' % lang)
ValueError: expected only letters, got 'utf-8'

-- 

*Bernardo Bello Ortí*

PhD student

CReSA-IRTA

Campus de Bellaterra-Universitat Autònoma de Barcelona

Edifici CReSA

08193  Bellaterra (Barcelona, Spain)

Tel.: 647 42 52 63 *www.cresa.es <http://www.cresa.es>  *

Galaxy stable not working on MAC OSX, but default is OK

Bernardo Bello

Bernardo Bello

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