About the creation of a new folder
Hi all, I would just like to ask if it's possible to create a new folder (via script) in the galaxy-dist folder. Cheers, CL
On May 10, 2012, at 11:34 PM, Ciara Ledero wrote:
Hi all,
I would just like to ask if it's possible to create a new folder (via script) in the galaxy-dist folder.
Hi Ciara, If you mean a new Data Library folder, then yes, via the API. If you mean a new subdirectory on the filesystem in the galaxy-dist directory, I'm not sure that I understand your question (since you can do that with 'mkdir'). --nate
Cheers,
CL ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at:
Thanks, Nate! I wasn't so sure before if using mkdir would do the trick. Actually, my main goal is to implement a slightly modified velveth in our galaxy. According to how it's run, I need to provide a directory. I was wondering how I could save the data in the created directory, since all the data that galaxy generates get stored in the database/files/000 folder. I also need to be able to use these data for velvetg. In line with my question, I found this in the galaxy version of velveth: velveth_jgi_wrapper.pl $output $output.extra_files_path Can you explain to me what $output.extra_files_path pertains to here? Cheers, CL
participants (2)
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Ciara Ledero -
Nate Coraor