[hg] galaxy 3256: Removed SOLiD option from BWA, cleaned up Bowt...

22 Jan 2010

details:   http://www.bx.psu.edu/hg/galaxy/rev/4cd66d01aaf0
changeset: 3256:4cd66d01aaf0
user:      Kelly Vincent <kpvincent@bx.psu.edu>
date:      Fri Jan 22 10:49:38 2010 -0500
description:
Removed SOLiD option from BWA, cleaned up Bowtie and BWA wrapper interfaces, and changed name of BWA index loc file

diffstat:

 buildbot_setup.sh                         |    3 +-
 test-data/bwa_phiX_sanger.fastq           |    4 -
 test-data/bwa_phiX_sanger_f.fastq         |    4 -
 test-data/bwa_phiX_sanger_r.fastq         |    4 -
 test-data/bwa_sanger.fastq                |   76 ---
 test-data/bwa_sanger_f.fastq              |   76 ---
 test-data/bwa_sanger_r.fastq              |   76 ---
 test-data/bwa_solid.fastq                 |  576 -----------------------------
 test-data/bwa_solid_f.fastq               |  192 ---------
 test-data/bwa_solid_r.fastq               |  192 ---------
 test-data/bwa_wrapper_in0.fastq           |  576 -----------------------------
 test-data/bwa_wrapper_in2.fastq           |  580 +-----------------------------
 test-data/bwa_wrapper_in3.fastq           |  196 +---------
 test-data/bwa_wrapper_in4.fastq           |  192 ---------
 test-data/bwa_wrapper_in5.fastq           |    4 -
 test-data/bwa_wrapper_in6.fastq           |    4 -
 test-data/bwa_wrapper_out0.sam            |    1 -
 test-data/bwa_wrapper_out0b.sam           |  144 -------
 test-data/bwa_wrapper_out1.sam            |  145 +-------
 test-data/bwa_wrapper_out2.sam            |   97 +----
 test-data/bwa_wrapper_out3.sam            |    3 +-
 test-data/bwa_wrapper_out4.sam            |    2 -
 tool-data/bwa_index.loc.sample            |   29 +
 tools/sr_mapping/bowtie_color_wrapper.xml |  149 ++++--
 tools/sr_mapping/bowtie_wrapper.py        |   10 +-
 tools/sr_mapping/bowtie_wrapper.xml       |  145 ++++--
 tools/sr_mapping/bwa_wrapper.py           |  196 +++++----
 tools/sr_mapping/bwa_wrapper.xml          |  353 ++++++-----------
 28 files changed, 470 insertions(+), 3559 deletions(-)

diffs (truncated from 4465 to 3000 lines):

diff -r ea652508497a -r 4cd66d01aaf0 buildbot_setup.sh

--- a/buildbot_setup.sh	Fri Jan 22 08:47:05 2010 -0500
+++ b/buildbot_setup.sh	Fri Jan 22 10:49:38 2010 -0500
@@ -21,6 +21,7 @@
 /depot/data2/galaxy/blastdb.loc
 /depot/data2/galaxy/bowtie_indices.loc
 /depot/data2/galaxy/bowtie_indices_color.loc
+/depot/data2/galaxy/bwa_index.loc
 /depot/data2/galaxy/encode_datasets.loc
 /galaxy/home/universe/encode_feature_partitions
 /depot/data2/galaxy/lastz_seqs.loc
@@ -32,8 +33,6 @@
 /depot/data2/galaxy/quality_scores.loc
 /depot/data2/galaxy/regions.loc
 /depot/data2/galaxy/sam_fa_indices.loc
-/depot/data2/galaxy/sequence_index_base.loc
-/depot/data2/galaxy/sequence_index_color.loc
 /depot/data2/galaxy/taxonomy
 /depot/data2/galaxy/twobit.loc
 "
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_phiX_sanger.fastq
--- a/test-data/bwa_phiX_sanger.fastq	Fri Jan 22 08:47:05 2010 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-@081017-and-081020:1:1:1715:1759
-GGACTCAGATAGTAATCCACGCTCCTTTAAAATATC
-+
-II#IIIIIII$5+.(9IIIIIII$%*$G$A31I&&B
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_phiX_sanger_f.fastq
--- a/test-data/bwa_phiX_sanger_f.fastq	Fri Jan 22 08:47:05 2010 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-@081017-and-081020:1:1:1715:1759/2
-ACGCTCCTTTAAAATATC
-+/2
-IIIII$%*$G$A31I&&B
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_phiX_sanger_r.fastq
--- a/test-data/bwa_phiX_sanger_r.fastq	Fri Jan 22 08:47:05 2010 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-@081017-and-081020:1:1:1715:1759/1
-GGACTCAGATAGTAATCC
-+/1
-II#IIIIIII$5+.(9II
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_sanger.fastq
--- a/test-data/bwa_sanger.fastq	Fri Jan 22 08:47:05 2010 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,76 +0,0 @@
-@HWI-EAS91_1_30788AAXX:1:1:1761:343
-AAAAAAANNAAAAAAAAAAAAAAAAAAAAAAAAAAACNNANNGAGTNGNNNNNNNGCTTCCCACAGNNCTGG
-+
-IIIIIII""IIIIIIIIIII?I0IIIIHIIIGIIIHI""I""IIII"I"""""""IIIIIIHIIII""1III
-@HWI-EAS91_1_30788AAXX:1:1:1578:331
-GTATAGANNAATAAGAAAAAAAAAAATGAAGACTTTCNNANNTCTGNANNNNNNNTCTTTTTTCAGNNGTAG
-+
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIIII""I""IIII"I"""""""IIIIIIIIIII""II7I
-@HWI-EAS91_1_30788AAXX:1:1:1647:512
-GTTCCATNNATCTGTGTGTCTATTTTTGTGCAAGTAANNCNNTGTTNANNNNNNNTGAAGAAGACANNAAGA
-+
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIIII""I""IIII"I"""""""IIIIIIIIGII""IIII
-@HWI-EAS91_1_30788AAXX:1:1:1570:620
-GAGGTGTNNAAAATGAGAAAGGTCAAGGAGCATGTGCNNGNNTCAGNGNNNNNNNCACTGTACTGCNNGCTA
-+
-IIIIIII""IIIIIIIIIIIIIBIIIIIIIIIIIIII""I""IIII"I"""""""IIII@4EIII:""I?E6
-@HWI-EAS91_1_30788AAXX:1:1:1599:330
-GTTGGAGNNTGTCAAATGCCTTCTCTGCATCTATTGCNNANNGCTTNCNNNNNNNATCCTACCAAANNTTCA
-+
-IIIIIII""IIIIIIIIIIIIIIIIIII<III@IIII""I""IIII"I"""""""@IIHI16IF51""I:A<
-@HWI-EAS91_1_30788AAXX:1:1:1652:270
-GCCAAGCNNAGCAAATGTTTGAAGTCTCTAGGAGTGANNANNTTCANTNNNNNNNTCTTCTCTCTTNNGTAT
-+
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIII6IIII""I""IIII"I"""""""IIIIIIIIIII""<D9I
-@HWI-EAS91_1_30788AAXX:1:1:1746:351
-GCCTTCGNNAGGTCTCAGCGCTTTCTCTGTGTTCTTTNNANNATACNANNNNNNNAAACTAAAAAANNCAAA
-+
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIIII""I""IIII"I"""""""BIIIH:7IIII""I0>I
-@HWI-EAS91_1_30788AAXX:1:1:1582:633
-GGATGTGNNGAAAGGAGAACCCTCATACACTGCTGGGNNTNNTCTGNTNNNNNNNATACCCTCAAGNNCCAT
-+
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIIII""I""IIII"I"""""""IIFIIIIIC3I""IIII
-@HWI-EAS91_1_30788AAXX:1:1:1598:534
-GAATCATNNAATCCGCTTGGTTTGACACTTTGGATTTNNANNTCCANANNNNNNNGACTAAGAAACNNAGAT
-+
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIIII""I""IIII"I"""""""II.IIIICIII""IIII
-@HWI-EAS91_1_30788AAXX:1:1:1572:324
-GGTGGTGNNGTCAGATCAGACAGGCTCCCAAGAAGCTNNTNNGCTTNGNNNNNNNTCAGTAAAGCGNNACAA
-+
-IIIIIII""IIIIIIIIIIIIIIIIIIII+7I05III""I""IIII"I"""""""II3II-/EIGI""A84;
-@HWI-EAS91_1_30788AAXX:1:1:1749:466
-GTTGTGTNNTTTCTTTCAATATTGTGATCTGGTTTAANNTNNATCCNCNNNNNNNGAGGCTTTTGTNNGGAC
-+
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIIII""I""IIII"I"""""""ICIIIIIGII@""EI1:
-@HWI-EAS91_1_30788AAXX:1:1:1629:446
-GCAAAGGNNATGGGCAAAACAGTTCTTTGGTTAATGTNNTNNTAAANANNNNNNNTAAATCTTTCTNNAATG
-+
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIIII""I""IIII"I"""""""IIIII?H<EII""I:I?
-@HWI-EAS91_1_30788AAXX:1:1:1763:587
-GATACAGNNCTGTTTTCCTTATTAATTTCCAGTAGCTNNANNTTGTNTNNNNNNNAATCTTGAGTTNNGCCA
-+
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIIII""I""IIII"I"""""""IIIIIIIIIII"")II?
-@HWI-EAS91_1_30788AAXX:1:1:1616:363
-GATGAAANNCGGAAGCGATTGAAAAAATAGAAGGGGANNANNGAAANCNNNNNNNTGAACGATTTTNNATTT
-+
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIDIIIII""I""IIII"I"""""""FI@7II1IIII""-III
-@HWI-EAS91_1_30788AAXX:1:1:1768:715
-GTATCATNNCAGAAACACCATAAGTAGCTGCTTTTTANNANNTTAANANNNNNNNAACCCTTTATTNNTGAC
-+
-IIIIIII""IIIIIIIIIIIIIDIIIIIIIIIIIIII""I""IIII"I"""""""IIIIIIIIIII""I9F<
-@HWI-EAS91_1_30788AAXX:1:1:1572:270
-GATTAGGNNTGCAAAGAAACTGCGTTTCACAGGCCTCNNGNNGGCTNCNNNNNNNAGGGCGAGTTGNNCCCC
-+
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIIII""I""IIII":"""""""IIII5IIIBII""IIII
-@HWI-EAS91_1_30788AAXX:1:1:1785:1272
-GTTNNNNNNATGCACATTNNATNAAATNNTTGCAGTGNNANNTGGGNCNNNNNNNCAAGTGAACTTNNACGT
-+
-III""""""IIIIIIIII""FI"IIII""II+ICIII""I""IIII"I"""""""IIIIIIIIGII""I;I@
-@HWI-EAS91_1_30788AAXX:1:1:1673:514
-GTTTTGANNATGGTTTCTCTTCTGTTGTAACTCCATANNANNAAAANTNNNNNNNCGAACTGGTTCNNGAAC
-+
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIII1II""I""IIII"I"""""""II%I'$+ACI/""3(.I
-@HWI-EAS91_1_30788AAXX:1:1:1634:330
-GCTCTGCNNAGTGCTCTTACAGCCTAGTGGGAACATANNANNTGGANGNNNNNNNCTGTGGGGCACNNCTCG
-+
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIII8IIII""I""IIII"I"""""""IIIEIIIII8I""@7>I
\ No newline at end of file
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_sanger_f.fastq
--- a/test-data/bwa_sanger_f.fastq	Fri Jan 22 08:47:05 2010 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,76 +0,0 @@
-@HWI-EAS91_1_30788AAXX:1:1:1761:343/2
-CNNANNGAGTNGNNNNNNNGCTTCCCACAGNNCTGG
-+/2
-I""I""IIII"I"""""""IIIIIIHIIII""1III
-@HWI-EAS91_1_30788AAXX:1:1:1578:331/2
-CNNANNTCTGNANNNNNNNTCTTTTTTCAGNNGTAG
-+/2
-I""I""IIII"I"""""""IIIIIIIIIII""II7I
-@HWI-EAS91_1_30788AAXX:1:1:1647:512/2
-ANNCNNTGTTNANNNNNNNTGAAGAAGACANNAAGA
-+/2
-I""I""IIII"I"""""""IIIIIIIIGII""IIII
-@HWI-EAS91_1_30788AAXX:1:1:1570:620/2
-CNNGNNTCAGNGNNNNNNNCACTGTACTGCNNGCTA
-+/2
-I""I""IIII"I"""""""IIII@4EIII:""I?E6
-@HWI-EAS91_1_30788AAXX:1:1:1599:330/2
-CNNANNGCTTNCNNNNNNNATCCTACCAAANNTTCA
-+/2
-I""I""IIII"I"""""""@IIHI16IF51""I:A<
-@HWI-EAS91_1_30788AAXX:1:1:1652:270/2
-ANNANNTTCANTNNNNNNNTCTTCTCTCTTNNGTAT
-+/2
-I""I""IIII"I"""""""IIIIIIIIIII""<D9I
-@HWI-EAS91_1_30788AAXX:1:1:1746:351/2
-TNNANNATACNANNNNNNNAAACTAAAAAANNCAAA
-+/2
-I""I""IIII"I"""""""BIIIH:7IIII""I0>I
-@HWI-EAS91_1_30788AAXX:1:1:1582:633/2
-GNNTNNTCTGNTNNNNNNNATACCCTCAAGNNCCAT
-+/2
-I""I""IIII"I"""""""IIFIIIIIC3I""IIII
-@HWI-EAS91_1_30788AAXX:1:1:1598:534/2
-TNNANNTCCANANNNNNNNGACTAAGAAACNNAGAT
-+/2
-I""I""IIII"I"""""""II.IIIICIII""IIII
-@HWI-EAS91_1_30788AAXX:1:1:1572:324/2
-TNNTNNGCTTNGNNNNNNNTCAGTAAAGCGNNACAA
-+/2
-I""I""IIII"I"""""""II3II-/EIGI""A84;
-@HWI-EAS91_1_30788AAXX:1:1:1749:466/2
-ANNTNNATCCNCNNNNNNNGAGGCTTTTGTNNGGAC
-+/2
-I""I""IIII"I"""""""ICIIIIIGII@""EI1:
-@HWI-EAS91_1_30788AAXX:1:1:1629:446/2
-TNNTNNTAAANANNNNNNNTAAATCTTTCTNNAATG
-+/2
-I""I""IIII"I"""""""IIIII?H<EII""I:I?
-@HWI-EAS91_1_30788AAXX:1:1:1763:587/2
-TNNANNTTGTNTNNNNNNNAATCTTGAGTTNNGCCA
-+/2
-I""I""IIII"I"""""""IIIIIIIIIII"")II?
-@HWI-EAS91_1_30788AAXX:1:1:1616:363/2
-ANNANNGAAANCNNNNNNNTGAACGATTTTNNATTT
-+/2
-I""I""IIII"I"""""""FI@7II1IIII""-III
-@HWI-EAS91_1_30788AAXX:1:1:1768:715/2
-ANNANNTTAANANNNNNNNAACCCTTTATTNNTGAC
-+/2
-I""I""IIII"I"""""""IIIIIIIIIII""I9F<
-@HWI-EAS91_1_30788AAXX:1:1:1572:270/2
-CNNGNNGGCTNCNNNNNNNAGGGCGAGTTGNNCCCC
-+/2
-I""I""IIII":"""""""IIII5IIIBII""IIII
-@HWI-EAS91_1_30788AAXX:1:1:1785:1272/2
-GNNANNTGGGNCNNNNNNNCAAGTGAACTTNNACGT
-+/2
-I""I""IIII"I"""""""IIIIIIIIGII""I;I@
-@HWI-EAS91_1_30788AAXX:1:1:1673:514/2
-ANNANNAAAANTNNNNNNNCGAACTGGTTCNNGAAC
-+/2
-I""I""IIII"I"""""""II%I'$+ACI/""3(.I
-@HWI-EAS91_1_30788AAXX:1:1:1634:330/2
-ANNANNTGGANGNNNNNNNCTGTGGGGCACNNCTCG
-+/2
-I""I""IIII"I"""""""IIIEIIIII8I""@7>I
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_sanger_r.fastq
--- a/test-data/bwa_sanger_r.fastq	Fri Jan 22 08:47:05 2010 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,76 +0,0 @@
-@HWI-EAS91_1_30788AAXX:1:1:1761:343/1
-AAAAAAANNAAAAAAAAAAAAAAAAAAAAAAAAAAA
-+/1
-IIIIIII""IIIIIIIIIII?I0IIIIHIIIGIIIH
-@HWI-EAS91_1_30788AAXX:1:1:1578:331/1
-GTATAGANNAATAAGAAAAAAAAAAATGAAGACTTT
-+/1
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
-@HWI-EAS91_1_30788AAXX:1:1:1647:512/1
-GTTCCATNNATCTGTGTGTCTATTTTTGTGCAAGTA
-+/1
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
-@HWI-EAS91_1_30788AAXX:1:1:1570:620/1
-GAGGTGTNNAAAATGAGAAAGGTCAAGGAGCATGTG
-+/1
-IIIIIII""IIIIIIIIIIIIIBIIIIIIIIIIIII
-@HWI-EAS91_1_30788AAXX:1:1:1599:330/1
-GTTGGAGNNTGTCAAATGCCTTCTCTGCATCTATTG
-+/1
-IIIIIII""IIIIIIIIIIIIIIIIIII<III@III
-@HWI-EAS91_1_30788AAXX:1:1:1652:270/1
-GCCAAGCNNAGCAAATGTTTGAAGTCTCTAGGAGTG
-+/1
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIII6III
-@HWI-EAS91_1_30788AAXX:1:1:1746:351/1
-GCCTTCGNNAGGTCTCAGCGCTTTCTCTGTGTTCTT
-+/1
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
-@HWI-EAS91_1_30788AAXX:1:1:1582:633/1
-GGATGTGNNGAAAGGAGAACCCTCATACACTGCTGG
-+/1
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
-@HWI-EAS91_1_30788AAXX:1:1:1598:534/1
-GAATCATNNAATCCGCTTGGTTTGACACTTTGGATT
-+/1
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
-@HWI-EAS91_1_30788AAXX:1:1:1572:324/1
-GGTGGTGNNGTCAGATCAGACAGGCTCCCAAGAAGC
-+/1
-IIIIIII""IIIIIIIIIIIIIIIIIIII+7I05II
-@HWI-EAS91_1_30788AAXX:1:1:1749:466/1
-GTTGTGTNNTTTCTTTCAATATTGTGATCTGGTTTA
-+/1
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
-@HWI-EAS91_1_30788AAXX:1:1:1629:446/1
-GCAAAGGNNATGGGCAAAACAGTTCTTTGGTTAATG
-+/1
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
-@HWI-EAS91_1_30788AAXX:1:1:1763:587/1
-GATACAGNNCTGTTTTCCTTATTAATTTCCAGTAGC
-+/1
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
-@HWI-EAS91_1_30788AAXX:1:1:1616:363/1
-GATGAAANNCGGAAGCGATTGAAAAAATAGAAGGGG
-+/1
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIDIIII
-@HWI-EAS91_1_30788AAXX:1:1:1768:715/1
-GTATCATNNCAGAAACACCATAAGTAGCTGCTTTTT
-+/1
-IIIIIII""IIIIIIIIIIIIIDIIIIIIIIIIIII
-@HWI-EAS91_1_30788AAXX:1:1:1572:270/1
-GATTAGGNNTGCAAAGAAACTGCGTTTCACAGGCCT
-+/1
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIIIII
-@HWI-EAS91_1_30788AAXX:1:1:1785:1272/1
-GTTNNNNNNATGCACATTNNATNAAATNNTTGCAGT
-+/1
-III""""""IIIIIIIII""FI"IIII""II+ICII
-@HWI-EAS91_1_30788AAXX:1:1:1673:514/1
-GTTTTGANNATGGTTTCTCTTCTGTTGTAACTCCAT
-+/1
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIIIII1I
-@HWI-EAS91_1_30788AAXX:1:1:1634:330/1
-GCTCTGCNNAGTGCTCTTACAGCCTAGTGGGAACAT
-+/1
-IIIIIII""IIIIIIIIIIIIIIIIIIIIIII8III
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_solid.fastq
--- a/test-data/bwa_solid.fastq	Fri Jan 22 08:47:05 2010 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,576 +0,0 @@
-@1831_573_1004/1
-AATACTTTCGGCGCCCTAAACCAGCTCACTGGGG
-+
-><C&&9952+C>5<.?<79,=42<292:<(9/-7
-@1831_573_1050/1
-TTTATGGGTATGGCCGCTCACAGGCCAGCGGCCT
-+
-;@@17?@=>7??@A8?==@4A?A4)&+.'&+'1,
-@1831_573_1067/1
-AAGTATGAGTCATTTACCGGGATGCGAAGAAAAG
-+
-++#%(',%/$,+&1#&),)&+'*'*%#$&#%('$
-@1831_573_1219/1
-CGCCCTATAATAATACAGCGCGTTAGACCGCTCA
-+
-@@=4/+)5)408?'665>*/5?<61';<3,:,5-
-@1831_573_1242/1
-GCTGAATCGCACCTAGCAACTATAGCCGGGCCGC
-+
->>::>17=A5?@@=;7A=;2.60>82<8=74+;;
-@1831_573_1333/1
-AGAATCGTTACCACACACTGCGTCTGGGTATCCG
-+
-='@#%3=.>)/34*117,,/6-4+.9742456<)
-@1831_573_1362/1
-CGATCTCAACCAGGTCCGCGCCCACCCCTGCCTC
-+
-B@@?@@?@C@BA?@>@<@8A@?@'.8'?17:,+?
-@1831_573_1448/1
-TCACGCCGGTCCTTGACTGGCGTTCTCTTCGAGG
-+
-7=A)?,.@A@@:@@<=/7)@<-#8662%9613&+
-@1831_573_1490/1
-CTCGTCATGTTACGCAAAGGCACGTCACAGCACC
-+
-@@@?,@??@$><=>+%/*>*1,)?26&12'9%7.
-@1831_573_1523/1
-ATGGAACGGAACGGGTGAGGAGGGGAACGTAGGG
-+
-,//*,#8''.6''6'2&27/80)%�'%#*,2'
-@1831_573_1578/1
-CGAGTAGCAAACAAGACGCCAATCCAGGCGACCC
-+
-?=@<@C@?@@??=>@;7<<8<694)3511(+1<.
-@1831_573_1647/1
-AGGGGTTTACACTATTCGACTGGGTGAGAGGCGT
-+
-?@@<@@???;A==@@;9?@?3=;6.4/;6:=/;4
-@1831_573_1684/1
-TTCAACTGCGTCGACGTAGCGCACAGGCGTCCGT
-+
->1:8<@39@@??9=;@@<>?@@<;<?7>76?9>?
-@1831_573_1769/1
-TGGACGTATAGTGGCGATGAGCATGTAGGTTCTC
-+
-54749&&767%/7;3$-7;3#,3//#,45/#&06
-@1831_573_1853/1
-CAAAACGCCCGGGGCCTCACATGCGCGGCAGTTC
-+
-4./B@@72B+/4?@?7?+@9/+99.')2<2&)2&
-@1831_573_1943/1
-ATAACGTATGGCAGTGAACGGGCGGAACCTGCCC
-+
->/*1,),@-)'0*>5'$/?6@/.&?8/(')A43,
-@1831_573_1977/1
-GGCGTAGGGCTCATTGTGCAAGTATCCGACCTCC
-+
-@?6@8@@9A@=4633A7?9?<3:+7>'@%@?%32
-@1831_574_109/1
-TCGGTTGCGTTACTTCATGGGAGGGCTTTACATT
-+
-7651#4817>@65<2:84716=788<1995.7?6
-@1831_574_148/1
-CGAACCTCGTATAACGGAGTAGTCGGAAACAGTC
-+
-;->3;;3>//>0;;7=,=4-4/+>029<9<624;
-@1831_574_185/1
-CCGTTTTGCCTAGTAATGCTCGGCGCAGCGTCGC
-+
-<4;%%@7>#*>97%6;+8$#<07%1372$%<54#
-@1831_574_243/1
-AGGCACCGTAACTCAGGACATTCTCGATTAGTTA
-+
-@@@95@=9?*><45$<@<4%@9?7#=?>7&>?97
-@1831_574_257/1
-ATACCTTCCAAAGCAATAGAATAAAAAACAGTAC
-+
->>B>)@?>B@B?@1%*%,#+00.'(+&5&%#$3&
-@1831_574_293/1
-TGCTGCAAATAAACATACAGCCTTCTAATGACTA
-+
-')7'.*%#&$'/.$##$.$&*)+*$#8%&%#&&%
-@1831_574_389/1
-CATGGCTATGCACCGGTTTGTAGCGTACTCGAGA
-+
-)$>/>8):2@:213;;.1)@3%64%+)<7)+$92
-@1831_574_575/1
-TTCTTGGCAAGCGCAGATTATGCGTTCCGCCTAG
-+
-?@>=?@>8@@@=@6*%&<='5@<<',0<=4*5/<
-@1831_574_592/1
-TCATTTACCACGTCAGGGTCGGAGTCATTCATTA
-+
-3-5)19,,<@>4067<2.-864346;9<1/;212
-@1831_574_617/1
-AAGCATCGGCGGGAGCGCAAGCTGGGAAGGTGCC
-+
->@?;>?=@==@>@=5?@+@:@40@><:0)')64-
-@1831_574_725/1
-GACAAGATGGCTATTATTTACAATCCGATCTGCA
-+
-'>?52+5=;4$6;<8.1<47*9+?7(+5;-).)4
-@1831_574_734/1
-CCTGTACGAAAGAACGTAGGCATGGGCTGGGGGG
-+
--&.$2&<*(-%):/)%5:)/%7+,9034*A.?70
-@1831_574_824/1
-AGCGCAAATTATGCGTTCCGCCTAGCGGAGAACT
-+
-@@@;;),+@<-<7;<&89??&29?<$2:A<);8?
-@1831_574_959/1
-CGCGCTAGGACTCGGCCCCAAGAGACGTTCCGCC
-+
-A=;+?@9;/<@;<8#&&/*%(%.0$0$2)+1$-1
-@1831_574_1062/1
-ACCGGTAATATAAGGCAACATGATTACGGCCACG
-+
-@821<//:136/8<1/5.427.;>288/0<1$)/
-@1831_574_1092/1
-GACTGGCGAAATCATCGCGGAAAAACCCCTATCA
-+
-8?.,98)03%#,,,(,++$'69'#9'7#';6.%2
-@1831_574_1103/1
-ATCTCCTGATTAGACATATCTCCGTAGCTCACGC
-+
-??>?@=>@@A<>?=@==<:?<;58'&&):+35'1
-@1831_574_1116/1
-CACCTCACGTGAGTATAGCAGCCCGAGCGTCACC
-+
-@++,)/)?./)%<)2>.==:8?&;44&/&,)/*4
-@1831_574_1194/1
-TTATCACATTTGGGGATCGGAAGGGACTACTTCG
-+
-5>;,??9@9@?@1@@=@3=@>@4?@@94?75/,6
-@1831_574_1204/1
-CTTACTGGTCTGCTGGACATATAGTGGCGATGAA
-+
-A5A5B@5:;@@,.9?A1?#.?;3),>82%)='7*
-@1831_574_1306/1
-ATTGCTTAGATCCAGTGGCGCTCAATACAACGGA
-+
-2.7&%''.$&#'%##$#'#%')')$'$%$,)'.1
-@1831_574_1387/1
-GTACTTCTCAATGCTGCACTACTATGTACGCCCC
-+
-?A??:@?@@9?@@?9C;:>&).,,);&'<&7(/'
-@1831_574_1431/1
-GACCAGTTTCAGGGCTAACCGTCCCTACTCGACC
-+
-7?>9BA897;+8*=6#6.+5&-#26$0.,5&'$1
-@1831_574_1560/1
-GGCGTCTTAGGATTGAAGAGGGCCTCCCACCCCC
-+
-))&65<4=>99@:597(1&;+&(%&4#,#&&&*$
-@1831_574_1591/1
-TGAGCACTTATGGCTAGGCGTAGGGGACCGTGAG
-+
-=<A><?@78@<=;@&@6>8:?,><&&<7>8(8+9
-@1831_574_1624/1
-ACGGGAAGGGCTGGAATCTACCCAGTAGGCATTG
-+
-<6.&(,7-+))7..'/;43.)927.(<85&13-)
-@1831_574_1826/1
-TACGTCGCGACCGAGCGTTATATAGTCTGACCCC
-+
-@<<,))459<?.+57'-'&6?1)(;1;0&%4,#$
-@1831_574_1903/1
-AGTGCAACATCTGCTTTGCTTATCAGCACACGGC
-+
-956?@>;7@@@8:@>8><=9>9>@2=71?1:6;/
-@1831_574_1961/1
-GTTTCACTTCGGTTATTAAGAAACCCAAATGGAA
-+
->-07-@>(2'@<#064@%5%@@6.&<<(9)=:47
-@1831_575_54/1
-TTTCTTATGGGTAGAACAGCTGCCACTGACTGAA
-+
-=@@68<2;<8;?@<>+9>7,,6972&57:4&9<8
-@1831_575_80/1
-TCTTTGGGTTTGGGGCAATTTGGTATGTTCGTCT
-+
-?5><@?/=5%(&.5)+#/0'/'>#$/'37#()6&
-@1831_575_192/1
-AACTACGCCCCTTAATTACACAGCGCGTTAGACC
-+
-:8<,9(.=/)#%8$,4'<,:)3/.'.5<,>-;7'
-@1831_575_197/1
-TTCGCCTACACTTAGATACCTCTTAAACTCAATG
-+
--:?463@A:88?6?437<=.2&1.;@67.4@%2,
-@1831_575_223/1
-ACGCACAAAGGAGCTCGGCGCATAGCAACGCAGA
-+
-?>?8?@:?;>+$'%&,+#$.--#%$1'&#-7$&'
-@1831_575_420/1
-CCCACATGGAAAACACTCACCGCCGAACAGAGCG
-+
-2?.>?(-''2+..@),$%1@;')1)?+)7.')..
-@1831_575_434/1
-ATCGCTGCGAGGTCACCCTGGTTACGCCCCTTCC
-+
-@@><@B@>=@@?>><@?;)@?;6.?=4,'';/3)
-@1831_575_444/1
-TAGGCGACCGTGAGGACAAGAGCTGTTGCCTTGA
-+
-2@@;<.=?@<+=:A<<@?<</>@><(<8>4&5;>
-@1831_575_459/1
-CTTATCAGCACACGGTTTACCAGTCCGACTCCAA
-+
-@@C@?A@@A@??A@@'6@@B'=;C@'4<=9,@1.
-@1831_575_506/1
-CGCAGAACCCGCACGCTTGTGCTCACCACTGTAC
-+
-?)2*5@3+.7=?A:8@,/&):@37/<89'+4*)*
-@1831_575_569/1
-AGCAGACTGCTGTAACACGGTGTGGTGTAAGGAT
-+
-'9-,@29+479%&>9#&08=>7#9>,69/+'*3)
-@1831_575_622/1
-CCAAATCCGGCCCAGTAAGTGTCCTGTCGCACCC
-+
-A8B=@@?<@?<>>=?96<497)<4/<':4+;74+
-@1831_575_644/1
-CTTGAATGGCGATCTCGTCGAGGAAATACCACTA
-+
-<8>.>&,+)8.10':5(/-62&*.=/%(.<&&18
-@1831_575_663/1
-GGCAACTTATCCGCATTGGTCCCACTGGAGCGCA
-+
-@@@@A</;A>@6>0792<5966:?;25+:><1,+
-@1831_575_681/1
-TCTCCTGATTAGACATATCACTGTTGAACACAGC
-+
-72?.)25;96-14'*.03'#4#++$)/8+%/((&
-@1831_575_711/1
-TATGTTCGTCCACGTCAGACGCGCAAAGTTGCGC
-+
-%+:2(#'1+.)&*45-#,<A-%4;>+))<;##*&
-@1831_575_730/1
-CACACAGGAACCATAGCGTATGTTATTCACCCCC
-+
-%8<%-')5,*1&=#)(1*1)->7$.,4'4'&'*&
-@1831_575_904/1
-ACCCGCTTAAAGACGTGAATTTTGCCTCCGCGCC
-+
-<><.689@@7@<54:4=@>69=:+6-=42;8<:#
-@1831_575_938/1
-TCATCAGGGAAGGCTAGGGGTTTACACTATTCGA
-+
-:@@:?@;=8;>=;;:=<93<4.;<6:2<9;4)87
-@1831_575_970/1
-TGACTCCTACAGTCTTTATAGTACCGAGGGAGGC
-+
-@=@=;@@><@@:9<:=?;>@=?9>>?@:2===<5
-@1831_575_991/1
-TTCGGCGATCCCCCCCACGGCGCGATGCCGCGCA
-+
->>;7???/4<:::,#&*%'$--5-#(7)&&,-)%
-@1831_575_1138/1
-TTGAAAGACCTGAACGCGATTTCATGTTTACTGC
-+
-=0;%1936+?96?,?5<:2>@6@<:;4>.7;*:1
-@1831_575_1157/1
-TCGCTGTTTAGATTTCGGGAGGGTACTTCAGTGC
-+
-B@B>?A?A@?9'?;?&8?@@6;<@=+<:99+965
-@1831_575_1180/1
-GAATTCACGGCAGTGTTATCACCGTTTCCTTCCA
-+
-<B>5?':/78?;1;55:997@@>94=7<186->7
-@1831_575_1283/1
-GGTGGAATACTAAGGACTAATGTGCTGTCTCTTT
-+
-C@A54><?A78@<?2>:#>=?@2>80:'?69.'7
-@1831_575_1302/1
-CGACTATTCGTTTCGTCTAGAACGTGACACTAGC
-+
-12>/#2'&-2&%'7+$%*#$/1(&&12/$,2,,*
-@1831_575_1310/1
-CTTGCTCTCGAGCTATGCCTCAGGACACGCCCTT
-+
-<<>663?99@(@7=11@:@@/7??<@<;>'3-7;
-@1831_575_1321/1
-CAACACAGTTGAACGGCGGAGGAGTAAAGATGCG
-+
-;B@?@>=A@<A?>@>?6>@5>'4@9?)7@7?/89
-@1831_575_1373/1
-CGCTACCGGTTCCAACGGCTGCCTGACTCGCGGA
-+
-@@@>@;=9<@??7@>@:@;@;17?630/7=4,2<
-@1831_575_1419/1
-TGGGGAATATAACAGCGTAGCGTTGAACACTAGA
-+
-//3->&-.->%11/@&/&7:<,-1=,+2<6'%&<
-@1831_575_1436/1
-TGCATCTAGCGCGTATTGCGAGCCTTACGGATTC
-+
-2@=;39*3<*4<:>52>>9'7:<='0=>1'136<
-@1831_575_1442/1
-TCTGACAAGGTTCCTGCACCTGCGTCTGAGAGGG
-+
->58<?7>+1B6-/9<<:5?>A:1@?539.@4/1>
-@1831_575_1454/1
-CCTCCTAACCACGAGCCGAGGGGTCTCTGCCCCT
-+
-4=?8=6589=0:A=:?>6<;@/,4+-6+/'.,(,
-@1831_575_1500/1
-CACAAAAGGTCCCTACCTGTCTACCCTACATAGC
-+
-?@@?A@?8<6<:985=99999==B3<5<<,7?>9
-@1831_575_1535/1
-CTCGACGATATGACCGCCAGCCACTTAACTCCGC
-+
-B=@<@@B?:A@@=>@?68@=?@5?7;:6<<;>5<
-@1831_575_1724/1
-TCGTAAGTGTTAAGGAGCTGTGTACAAAACAACA
-+
-<B.+@),2*.%)))4%2@;7#%(%+$8))85%&5
-@1831_575_1829/1
-CATTTGCTGACCCTGCGTAGTTTAGTCTCACAGC
-+
-2(*'%.3$+7)@&%$'3*+*#/#/*+0.=&#)+0
-@1831_575_1898/1
-CTTACCATATCATCTCAACCCATAACAGCACTTA
-+
-B>@@&1/))'40)%#8/.%#8$((#;4'$'63,,
-@1831_575_1964/1
-GACAGACCATGAGGCTGAAGACTACTAAGTGCGT
-+
->39)@2<2/@+9?2=&)>>@*62=5&2<42.'?+
-@1831_576_32/1
-TACGCAACGATTTATGGCCTTATAATTGAGGCCA
-+
-<>?>?=7<2)522;><<@40@>704<>5=23@+&
-@1831_576_74/1
-ACATTCTGCAGTGGGACAGAGCGGTACGCCGCAA
-+
-=@@?@>(??<B5?@@@9<@><+><;@';>6961?
-@1831_576_86/1
-ATGAAAACGCATTAGGACAACCATAATGGCCTCA
-+
-811)2:*.++5</:3+43924*))/:,6&29)2/
-@1831_576_89/1
-GCTGTTTGATTTGAGAAGAGGAATTAAGCGCCGA
-+
-)69+,'.4=-,>/>(*$#)3030*'(,%)2##$,
-@1831_576_266/1
-ATGGGGTCACTCGACCTAATCCCGCGGCTTTGGT
-+
-@@?=;<?7=@>9,>@1$&&89$/:>7'3178%&6
-@1831_576_327/1
-GCCGTTCTACTCTAGCTGCAACTTGCGATTGCTA
-+
-@?@6@@;<@?><@>==3@:==<3@@>53<9><6=
-@1831_576_331/1
-GACGCTTTACTCCGGTAGTACCGTGCCGTTTATA
-+
--2)+(*.*1/;5%.-9&#/1'+($*$##()%/$.
-@1831_576_387/1
-ACACGCCATGATCCGATAAGAAGGGAACGTAAGG
-+
-8).$5#1#*%.$##.*#$%##-%,+,1#&%.%))
-@1831_576_406/1
-AGGTCTTACAGCACGGGGCTGAGCGCATCTGACC
-+
-4<>%%14:*4656)&<251&2+3#&19,6&4>5(
-@1831_576_449/1
-CTCGAACCGCGGGGTCCAAAGACTGCTGCAAGGA
-+
-+'&'.,,$/+.)$$8&%#+?&,#)-&###7,+#*
-@1831_576_519/1
-TACCTGCCTACTACTTGCTCTCGAGCTATGCCTC
-+
-=46<97@>2/6?;2<4A881>9121+<1/4.9+7
-@1831_576_603/1
-CAATATGTCTTAGTCGTGACTCGGCAACTTATCC
-+
-@46=@C.??<A79@@;-<@@>29B?>55<B7598
-@1831_576_655/1
-GAACAGTCTATAGTGGCGGGAATCTCGTCGTCAG
-+
-@AA9@@<6*>@@5/<@>9'=;>7+@?9>/9;+,%
-@1831_576_677/1
-TTTACTCAGTTGATACATCACTGTAGCACATAGG
-+
-290&/*0#&'&,.2'#&*$&('#-%($*#%$)#%
-@1831_576_718/1
-CGTGCCTTTCAGGGTCTTTTCTGGTCTGGTCGCT
-+
-4###$0###%(#########,####%####$###
-@1831_576_722/1
-CGTATGATGGCGAGTCTTTATAATCCAATCTGAA
-+
-*,-,##.)*&(*1%*(%(-2#+)-#.&-#%%$')
-@1831_576_754/1
-AGGCGTCCTGCATCGACCGTTCTATCCGCTTAGA
-+
-4//#(.$)'',>($<,##%((,#5?#0*%1*
-@1831_576_815/1
-TAGGCCTGATATGACACGATCACAGTGCAACATC
-+
-3>@?9>@?B=>=;>A???=>:25=4.25?6<57.
-@1831_576_882/1
-TGTAAGACGGTGAGGTGTAAGGATCAGACCACGG
-+
-26?8?@:4>@>96??<<=5'1<>9846=<9<1>8
-@1831_576_898/1
-AGTACTGTCGCGCATTGGGGTCCTGGTCGTTGCT
-+
-@@C2?C>?<>@886B?;?.??87=B<8<15??=.
-@1831_576_923/1
-CTGGACATGAGAGACTGCACGCGGTACACGTCGG
-+
-6.51=;.699<96>;;49<;;11;<@59:9=647
-@1831_576_930/1
-CTGGCATGTACGTCCATGTCAGACGAGCAGAACT
-+
-#*0.2&.:((#'14'##-)#%$$2%#$/1&#%/#
-@1831_576_1019/1
-GATGCGCGCTGTCATGGCATCGAACCATCGGTCG
-+
-<$>$,1,&++&@,.)'+/+#9'69/6'2(+-'9-
-@1831_576_1068/1
-AAGAGTGACTCACTTACCGGGATGCGATGGAGCC
-+
->><=4?;@7=??9?;9>5@9?:8@:=5';7;'#4
-@1831_576_1131/1
-AGTTCGGGAAGGGCTGGAATCTACCCAGTAGGCA
-+
-04@#@/@,4>9?2+?1571@',>=;(759;*92<
-@1831_576_1168/1
-CACTTAACTCCGCTGTCGGAAGCCTTACAAGACA
-+
-@CC6@@2?9=>7?;76<;467@;9,0%26'',4$
-@1831_576_1207/1
-CAACCTGACTAAACGGGGATACGCTGGCGCTACA
-+
-$>2,(&?4?(,@:<&,@>?$&:8A%%=0.%,597
-@1831_576_1289/1
-TAGCGCAAGTCCAGAATGTTCATAGACTCGCGAT
-+
-9<>1B@@;7@@663==28,5':8<<,.=2>>.50
-@1831_576_1329/1
-CCAATAGCAGAGACCTAATAGGAAACGAAAGCAA
-+
->&0,870/A@@/5.;=;:'&@3'&$$%,+#($&2
-@1831_576_1367/1
-GGTCTCATCCGTTCCAATCGGGACTTTGACCAGT
-+
-?@@<>@@=@<@<=@>@??9:?<=>=<8;59@787
-@1831_576_1416/1
-TAGCGTTCAACGTCGATCTCATCTTGCCGATGGC
-+
-';?..1.<@'.=+6.5?7<0-?7;(%=>56.98@
-@1831_576_1461/1
-GAGGGGCGGCCCGGTTCAAGCAGGTAAGCAACAA
-+
-1&74#(#(&##$#,'###%#%%#*#&%%##%%%'
-@1831_576_1605/1
-AGTGCAACATCTGCTTTGCTTATCAGCACACGGC
-+
-<@C@@>1;@:;<<@@9@???9<3?5-21=4877,
-@1831_576_1664/1
-CGCGCACAACTCGCCATGATACGACAAGACCCGA
-+
-@?>?@=A:@@>@='=<>=).>=9*8)(7#/++;)
-@1831_576_1671/1
-GTCTTTGTAAGCCTGGCCTGGTCAGGTCTGGTCT
-+
-@?@5>@@8&8?25#&)&5&&)15&&,&4%&,&6%
-@1831_576_1729/1
-CGTTTCGTCTACAACGTGACACTAGCACAGTATA
-+
-?@?<?<@>A?/==?>?7>?@8<?@>99;><+0=>
-@1831_576_1880/1
-TATGCGCTGTTGAGCTTACAACTCACTAGCGAAT
-+
-515/792,:,7/%/05,%$):+#8%2(1754))3
-@1831_576_1982/1
-AATGTCGTCAGACGACTTTGGCGCGAAAACCATA
-+
-@@?@,A><@9@=?@9B=8<6@@6@2<A?>.7<+@
-@1831_576_1987/1
-AAGGTCTTCTGTCGGCGCTGGACTGAACACCTGA
-+
-##()(#&##)%)/-#%$11#%3>'##&$,#$$'+
-@1831_576_2014/1
-CCGTGACACACAATGCCGGCCCCAGCCTAGCAAT
-+
-@@9,B29-5>'?,+?79+/A';'2@'5&/9,6&1
-@1831_576_2028/1
-ACTCGCCGCATCCCCGAGTGACGCTCGAGACCAA
-+
-<>9>5'2(&707.8#&&39,0%7/#(#,*%&5*+
-@1831_577_40/1
-CCCCGCGTTACGAACGAGAGAAATCTCTTATAAT
-+
-2/4('.')(<*?#$)%&<,/39<(.2,+<=@611
-@1831_577_119/1
-TCCCACAAGCCATTGACATGCTCGCTCTAAACAG
-+
->?C11)-1/)#;#/,850*+.+$$5550+%-.40
-@1831_577_133/1
-TGCTTGTACGGTCTAACGGGGTATGGGTTTCTGG
-+
-4@>>?=1?:+>@07@@><>@*<+1@15)96'2$)
-@1831_577_255/1
-ATTGAGGCCAAGATAATTGAGGAGAGAGAAGGTG
-+
-<=87@>69%**#&#-+$.#&&#+$-+%&%.,%5#
-@1831_577_281/1
-TATGTACGTCGCGTACACTCCGGGGCCCGCAAAA
-+
--:B;8@=;>7@>4?=?+659?;5<7?;9@8(>:?
-@1831_577_288/1
-CATCCGAGGCTATCAAGGCGTAAGCACTGACCTA
-+
-;/79??&=B::298*6.7/+4&21,7,6?.7#'6
-@1831_577_322/1
-GAATGCTGGAGTACATTATGACAAACTATCGGAG
-+
-=;>4506;255464-<#7+194&2<?65968)7/
-@1831_577_362/1
-CGATTAGTTACCACTCGTATTCGCACGCCCAGGA
-+
-2B?:@?@<?958=,3:,90:&'-99,6<5.($+6
-@1831_577_382/1
-GTCGCGTATTCCCCGATGCTATGTAGACTTGCAA
-+
-2957/:1))=76(*24;,3+:<.&.&-=1=2/5*
-@1831_577_464/1
-TAGAGGCACCCTAACTCAGGGCTTTCTCGATTAG
-+
-=<7/<826)>#.'&4204+5#/041.7*91&756
-@1831_577_488/1
-TGAATAGTTATGGCCAGAATGTCTGCACCGATAC
-+
-48.,*>6566<?8=<=<2>6;94>;=9>@8924@
-@1831_577_511/1
-GGTGCTTATCAGTTCTTTCTCGGGACTTGTATTT
-+
-7/+&$:<7%6,$$%'%/+)#$7((&*3>16'0/+
-@1831_577_545/1
-ACCGCTCTTTGGGTATGGGGCAATCTGGCATGTT
-+
-><<9?<>?A<481@<@8==@76/61<95.5988-
-@1831_577_559/1
-GTGCCACTATGTTCGACAGACCCTAAGGCGGAAG
-+
-<@;??@>@?/2<.@1=>12=61/;=?.&2+92)'
-@1831_577_562/1
-GTTCCACTACGTTCCACGCAAAGGAATCCGAATC
-+
-((&*&0%)1%)#($2-,***%/-,,))&,-.1'*
-@1831_577_637/1
-GCCTTCGCGGGAGCATATCAGTCGATACATCCCA
-+
--,4#>:-6+:8,&(5;3=0>7=68&1/9&'?;4,
-@1831_577_641/1
-TATCTACCACCGCGGTGGCGCGAGAATGCTCCCT
-+
-47;/':A;;5?:72,(=),#*?+.#&7$8#%7/'
-@1831_577_692/1
-CCGGTGAGAATTACATCGCGAGTACGCCCAAGGA
-+
-B,@?@B(@A?@+@@>@+?=>@'=<@<=<9=?75<
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_solid_f.fastq
--- a/test-data/bwa_solid_f.fastq	Fri Jan 22 08:47:05 2010 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,192 +0,0 @@
-@1378_11_329/2
-GTTCGTGGCCGGTGGGTGTTTGGG
-+
-###$$#$#$&#####$'$#$###$
-@1378_17_1788/2
-TGGGTGGATGTGTTGTCGTTCATG
-+
-#$#$###$#$#######$#$####
-@1378_25_2035/2
-GTGCGTCGGGGAGGGTGCTGTCGG
-+
-######%#$%#$$###($###&&%
-@1378_28_770/2
-GGTTGGGAGTTGGCGCGCGTGGTT
-+
-###$##%%$####%#%$#%%#($$
-@1378_33_1945/2
-GGGGGGGGGGGGGGGGGGGGGGGG
-+
-.6;?;55697>8779457986264
-@1378_34_789/2
-GGGCTTGCGTTAGTGAGAGGTTGT
-+
-###%$%$%%###$####$###$#&
-@1378_35_263/2
-GGCGGGGGGGGGGGGGGGGGGGGG
-+
-$%%&,)3/)%$-6'$&5&#$''5.
-@1378_43_186/2
-GCTAGGGTTTGGGTTTGCGGTGGG
-+
-$%#$########%##%#$###'#'
-@1378_51_1671/2
-GGTGTTGTTCGGATGTAGCGTGGG
-+
-##%$$####$########$##0##
-@1378_56_324/2
-GCTGGGTGATCTAAGGAATGTAAT
-+
-#$#####$$$#$$$$##%###*(#
-@1378_56_773/2
-TCTGGTCGGTTTCGGGGAGTGGAA
-+
-##%%#&$###$#$##%$####%%$
-@1378_62_2027/2
-GTTGGCCTGGCCTGCCGTGCTGCG
-+
-*##),/%##$)#%##1$#'%.#&#
-@1378_62_2029/2
-GGCGGTGTGTGGTGCGGCTGTGCG
-+
-/$$$=(####%####)$$%$-&%#
-@1378_67_1795/2
-CGTGCCAACGACCGTCCTACGGAG
-+
-@@.?7@@@.@:@A<<>>=>70<@7
-@1378_68_466/2
-GTGTCATCTGAGGTAAAGCATTGT
-+
-/##$09#$#.=$#$76+$%1'###
-@1378_68_1692/2
-TGTTCGATTTAGGTCTTGCCTCGC
-+
-###%%$%%##%$#$##$###$$#$
-@1378_80_664/2
-TGTCTGCGTTGTATCTCTGGTGTA
-+
-%##%,%$$#&$$###$#$%##'%#
-@1378_85_1786/2
-CCCTAGGAGCGTATACCGGACGAG
-+
-,'&/%/@,&1,&'/)&,6&&1)((
-@1378_86_1011/2
-AGGCGATGGGATATTATTTTACTT
-+
-:$###)%##$9$###1$$#$2###
-@1378_86_1789/2
-GGCCAGGTACTAATAAATTCAACA
-+
-1.51/&%#'$,*?%#6&0$$5,20
-@1378_91_1596/2
-GCTTTTTCATTCGGTGCCTTTGGA
-+
-'>%/3%=()8'#.%?50$&5>%)%
-@1378_94_1595/2
-GCGGGTTAACCCAGTACCTCTGGC
-+
-,8@6'>8<76>@@(->9)7'*941
-@1378_95_1039/2
-GTTCTGTGCCAGGTGAGGTACGGA
-+
-&##,./#$&)6##+,'#$$0(##$
-@1378_95_1767/2
-CTAATTGACCGGGCAAGCTATTAA
-+
-',,2'(10/>:=/7).3&%6&)&6
-@1378_96_1037/2
-CTGCTGGGCCATTTGACTTACTCA
-+
-'$#+#(##-%5##+*&###-.$$$
-@1378_96_1764/2
-TCTTTGTAACCCACTTAGTATTTC
-+
-4='28>.@4881B807:822>%)1
-@1378_98_1574/2
-AGGCGAGTGTGGGGGTTGTTTGAG
-+
-+%%$#)##%##$####%###$%$#
-@1378_107_1647/2
-GGTCTGGTTCTATGTTGGTCGACT
-+
-###'$$#$$$(#%###(#$##$%#
-@1378_111_829/2
-GGTCTTCTATGGTGCTAAATTAGT
-+
-$##'&###$##)#%($#$%#$'%#
-@1378_111_1900/2
-GCACGCCTTTGGGCTAAGCCGTAA
-+
-)$)'#%$########$'#&%$#(#
-@1378_112_1483/2
-TGGAGTGGTGTGTTTGCTGAGCCA
-+
-#$#)#############$#%#%'%
-@1378_125_1287/2
-TGACGTGGGTTGTCCCGTGAGATT
-+
-##$%%#$###$##$$#&%##$(%%
-@1378_126_468/2
-AAAAAACGGGCCGGGCGGACTAGG
-+
-@@B@@@>@2>1+?:92)>@8&&<+
-@1378_127_664/2
-TCGCTTTGCCTATGTTTGTTCGGA
-+
-#%$%#&##$%#%%###$$###)-'
-@1378_129_463/2
-AAAAAAAAAAAAAAAAAAAAAAAA
-+
-,)&20%8'(&35-***1-2&+510
-@1378_129_875/2
-GACCTTTACGTATTGGGGGTTGGC
-+
-###)###+###$##$#&%##$,#$
-@1378_140_1251/2
-TTTCCTTCGTGTGCGTGCGGAGTG
-+
-#%#%$##$$$######.$$$%#%(
-@1378_141_809/2
-TCTCGTGGTTTCTTTTTTATGTGT
-+
-##%)##$$#####%$#$#%%#'##
-@1378_144_983/2
-GTTCGTTCGTGGTGTACGAGGGTG
-+
-#(#%#####($#%##$$#%##%#)
-@1378_153_270/2
-GGCCGTGTGCGGGTGTAGATTGGA
-+
-%$##($######&##$&$$$$%##
-@1378_155_1689/2
-CGCGTTCGGACAAAGCTAGCACCT
-+
-@4@@=6=@@<4:@@681@@@.24.
-@1378_157_1580/2
-GGGATTGAAGGGATGTATGCTAGG
-+
-#%$&%#$$'%$%#$##*#%$$$$#
-@1378_161_317/2
-AATCCATACCCACAAAAGCAGGCC
-+
-.&%','(@''?7//+&)+2.+)0)
-@1378_177_735/2
-CGAGCCCTAAACCATGAGATCGGA
-+
-@@B>@AC9@A<B8@=9>7@5)>,0
-@1378_181_1684/2
-TTTCTGTTGTGGTTTTGTTGGGGT
-+
-$##'$%'##%##$%$#$$####$*
-@1378_187_1407/2
-TTGGGTGAAATCTTGTCGAGTGGA
-+
-####&##$$###$#####%##%%)
-@1378_203_721/2
-CCTTTACGATCATAAACCATGACC
-+
-9<&./1&@;12')?<1',?/)&/.
-@1378_206_2039/2
-CCCCCCCCCCCCCCCCCCCCCCCC
-+
-?=>>?=:;<>>4::<=56199(05
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_solid_r.fastq
--- a/test-data/bwa_solid_r.fastq	Fri Jan 22 08:47:05 2010 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,192 +0,0 @@
-@1378_11_329/1
-AGACCGGGCGGGGTGGCGTTCGGT
-+
-%##+'#######%###$#$##$(#
-@1378_17_1788/1
-TGCCGTGTCTTGCTAACGCCGATT
-+
-#'#$$#$###%%##$$$$######
-@1378_25_2035/1
-CTGCGTGTTGGTGTCTACTGGGGT
-+
-#%#'##$#$##&%#%$$$%#%#'#
-@1378_28_770/1
-CTGCTATGCCGGCCGCCTGCCCCT
-+
-%##(#$$#%$#$%###$%%$##$#
-@1378_33_1945/1
-GGGGGGGGGGGGGGGGGGGGGGGG
-+
-+9;64287788752796/576352
-@1378_34_789/1
-ATGGTGGCTGACGCGTTTGACTGT
-+
-#$##%#$##$&$#%##$##$###$
-@1378_35_263/1
-GGGCGGGGGGCGGCGGGGGGGGGG
-+
-),,#%'$)'-(%&%'%',%%&&(&
-@1378_43_186/1
-ATACTAGTTGGGACGCGTTGTGCT
-+
-#$(4%$########$#$###$$$#
-@1378_51_1671/1
-TGGGTAGGTGCGGCTCTTGCGGTC
-+
-##$#$%###%%#%#$##$$#####
-@1378_56_324/1
-AGGCTTGGATTGTTGCGCTGACCT
-+
-/+#**###%%##%#####$$$#$#
-@1378_56_773/1
-TGTCGTGAGGTCACTTATCCCCAT
-+
-&%#%##%%#####&#$%##$%##$
-@1378_62_2027/1
-CTTCCACGATCTGCTCGCTGTGGT
-+
-(#&&$##$$#$%#%$$$#$###'#
-@1378_62_2029/1
-TCTGGGCTGTCTTCGGGTCGGTGT
-+
-$%$$####$##$$#)##%%#$###
-@1378_67_1795/1
-TAGTGGGCTAGTCCGGGATCTACC
-+
-B@C2@@?;-@@1>'A@@91@.@1'
-@1378_68_466/1
-GTGATCGTCGGTGCCAGTCCCTGT
-+
-#(%)+##$#$#%#+$%##$#####
-@1378_68_1692/1
-GGTCTTCTGGGCACGGGCCAAGTT
-+
-###)%'&%##$###%#######$#
-@1378_80_664/1
-CTGCTTTGATCCCCGGTGGAGCAC
-+
-7#%###$$6#######$##$$$##
-@1378_85_1786/1
-ATACTATGTCGATCTGTAAAAAAA
-+
-)&.)#3%@$&%-,2#&+.-%0&./
-@1378_86_1011/1
-CTACGTTATTGCTCTGTTTGTCCT
-+
-######$%##$$$%###%#$####
-@1378_86_1789/1
-CGAATATCCCCTGGTTTAGAAGTA
-+
-61?1;@/>@<=/(.7'(<5@=%$=
-@1378_91_1596/1
-TTAGCGGTTGACTATCTGCTGACA
-+
-*&+'#9'(%*'#//,&<),/)'*#
-@1378_94_1595/1
-CGTGCGACAGCCCATGTTTTCAGA
-+
--=..5,3826&*+.+#+#%%6;%#
-@1378_95_1039/1
-CGGCGTCCATCTTCGCCTTGAGAT
-+
-$##.#$##$$#%$#$%%$###$)$
-@1378_95_1767/1
-ACACGCACCATCTGGCGGCTAACC
-+
-86<65<4<C27/$5+#;-$+#2%$
-@1378_96_1037/1
-ATCCCCCAAGATGCCTGTTGATTG
-+
-$#$'##$$$#%$$#%###+##$#$
-@1378_96_1764/1
-TACACCGGAACCTTGCACTAAAGC
-+
-6-9'<#+81?+*<8-=69&6;*3)
-@1378_98_1574/1
-GTTCTGCCGGTGTCTGTGGCGGGC
-+
-$$#+&$$####%$$$###$%#%%#
-@1378_107_1647/1
-AGGCCTACTACGCGTCATTGATAG
-+
-&#$$#$(.#%#$$####&$%##($
-@1378_111_829/1
-TGCGGCACTTGCTTCTTCGTATTT
-+
-%#%##%#$%#$#%###$$##&#$$
-@1378_111_1900/1
-TCCCCTCGCTCGGCTCTGTGCTGT
-+
-$&%*$#(#)##$#'##%(##$#$%
-@1378_112_1483/1
-TGTCCAGCTATGCGGCTTCCTCCT
-+
-%#$+#%#&#$#####%####%$##
-@1378_125_1287/1
-TGTCTCTGGGGGGCCTGGTTAGGT
-+
-$##13$'%#$###$$###$$$#&#
-@1378_126_468/1
-TCTCCTGATTAGACATATCTCCGT
-+
-7>@318?=,=8@49579?..7,7)
-@1378_127_664/1
-AGAGGTTGGTGTCTTGTCGCAGCT
-+
-##'#$######$$%######$$$#
-@1378_129_463/1
-CCTGTGGGCCAAGCCCAATGAAAG
-+
-8),,<6(--)<()5&.&/8+;.2+
-@1378_129_875/1
-TTTCTATGGCTTACGCTGTCTGCC
-+
-#$($##%####%$#$#####$###
-@1378_140_1251/1
-ATCCTAGCGCGGTGTCTTGGGGAC
-+
-#$%1#$$$##$##$#$#$##$%$$
-@1378_141_809/1
-TGTCCTCCAGTGTCTGTTGGGTGT
-+
-%&,-##$$#(%###$#$$'###'#
-@1378_144_983/1
-AGCGCCCGGTTGGTGCGGCTCGTC
-+
--$(&%*$#*#))#$$$#%%$#$##
-@1378_153_270/1
-AGTCCTTGTCCCCTGGGTTTTCCC
-+
-+''$#&%$%#$##&$$($#&#$$#
-@1378_155_1689/1
-TTGGGAGGGAGAGAGACTAGACCG
-+
-?4@@4<<??<?-@4@=4<5<?:/>
-@1378_157_1580/1
-TGGGCCTCGGTGCCCTTGGTCTGT
-+
-#%)$##'#$$$&#####%#$#$##
-@1378_161_317/1
-TTGGCCGGCAACCCCGGTACCTAA
-+
-7<,<'@)@>.)2@/')'&(?/-<(
-@1378_177_735/1
-AGTACGCCATGTATTTGCGACCAG
-+
-=?@?C<88@=>:7>@55/.,416,
-@1378_181_1684/1
-CGACTCCCGCATTCACGGTCAAGT
-+
-&*#,##$#&$*$$#$#$$$#%$##
-@1378_187_1407/1
-TGGCGTCCACTCGTGGGTCTATCG
-+
-$#$'%#$%$%&$%#####$#$#%#
-@1378_203_721/1
-CCTAAATAACCCAGGGTAAAAGAT
-+
-9<1+2+1@=259@+;2.71&@+2&
-@1378_206_2039/1
-CCCCCCCCCCCCCCCCCCCCCCCC
-+
-9@?8>;>>><<994;=895895-8
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_wrapper_in0.fastq
--- a/test-data/bwa_wrapper_in0.fastq	Fri Jan 22 08:47:05 2010 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,576 +0,0 @@
-@1831_573_1004/1
-AATACTTTCGGCGCCCTAAACCAGCTCACTGGGG
-+
-><C&&9952+C>5<.?<79,=42<292:<(9/-7
-@1831_573_1050/1
-TTTATGGGTATGGCCGCTCACAGGCCAGCGGCCT
-+
-;@@17?@=>7??@A8?==@4A?A4)&+.'&+'1,
-@1831_573_1067/1
-AAGTATGAGTCATTTACCGGGATGCGAAGAAAAG
-+
-++#%(',%/$,+&1#&),)&+'*'*%#$&#%('$
-@1831_573_1219/1
-CGCCCTATAATAATACAGCGCGTTAGACCGCTCA
-+
-@@=4/+)5)408?'665>*/5?<61';<3,:,5-
-@1831_573_1242/1
-GCTGAATCGCACCTAGCAACTATAGCCGGGCCGC
-+
->>::>17=A5?@@=;7A=;2.60>82<8=74+;;
-@1831_573_1333/1
-AGAATCGTTACCACACACTGCGTCTGGGTATCCG
-+
-='@#%3=.>)/34*117,,/6-4+.9742456<)
-@1831_573_1362/1
-CGATCTCAACCAGGTCCGCGCCCACCCCTGCCTC
-+
-B@@?@@?@C@BA?@>@<@8A@?@'.8'?17:,+?
-@1831_573_1448/1
-TCACGCCGGTCCTTGACTGGCGTTCTCTTCGAGG
-+
-7=A)?,.@A@@:@@<=/7)@<-#8662%9613&+
-@1831_573_1490/1
-CTCGTCATGTTACGCAAAGGCACGTCACAGCACC
-+
-@@@?,@??@$><=>+%/*>*1,)?26&12'9%7.
-@1831_573_1523/1
-ATGGAACGGAACGGGTGAGGAGGGGAACGTAGGG
-+
-,//*,#8''.6''6'2&27/80)%�'%#*,2'
-@1831_573_1578/1
-CGAGTAGCAAACAAGACGCCAATCCAGGCGACCC
-+
-?=@<@C@?@@??=>@;7<<8<694)3511(+1<.
-@1831_573_1647/1
-AGGGGTTTACACTATTCGACTGGGTGAGAGGCGT
-+
-?@@<@@???;A==@@;9?@?3=;6.4/;6:=/;4
-@1831_573_1684/1
-TTCAACTGCGTCGACGTAGCGCACAGGCGTCCGT
-+
->1:8<@39@@??9=;@@<>?@@<;<?7>76?9>?
-@1831_573_1769/1
-TGGACGTATAGTGGCGATGAGCATGTAGGTTCTC
-+
-54749&&767%/7;3$-7;3#,3//#,45/#&06
-@1831_573_1853/1
-CAAAACGCCCGGGGCCTCACATGCGCGGCAGTTC
-+
-4./B@@72B+/4?@?7?+@9/+99.')2<2&)2&
-@1831_573_1943/1
-ATAACGTATGGCAGTGAACGGGCGGAACCTGCCC
-+
->/*1,),@-)'0*>5'$/?6@/.&?8/(')A43,
-@1831_573_1977/1
-GGCGTAGGGCTCATTGTGCAAGTATCCGACCTCC
-+
-@?6@8@@9A@=4633A7?9?<3:+7>'@%@?%32
-@1831_574_109/1
-TCGGTTGCGTTACTTCATGGGAGGGCTTTACATT
-+
-7651#4817>@65<2:84716=788<1995.7?6
-@1831_574_148/1
-CGAACCTCGTATAACGGAGTAGTCGGAAACAGTC
-+
-;->3;;3>//>0;;7=,=4-4/+>029<9<624;
-@1831_574_185/1
-CCGTTTTGCCTAGTAATGCTCGGCGCAGCGTCGC
-+
-<4;%%@7>#*>97%6;+8$#<07%1372$%<54#
-@1831_574_243/1
-AGGCACCGTAACTCAGGACATTCTCGATTAGTTA
-+
-@@@95@=9?*><45$<@<4%@9?7#=?>7&>?97
-@1831_574_257/1
-ATACCTTCCAAAGCAATAGAATAAAAAACAGTAC
-+
->>B>)@?>B@B?@1%*%,#+00.'(+&5&%#$3&
-@1831_574_293/1
-TGCTGCAAATAAACATACAGCCTTCTAATGACTA
-+
-')7'.*%#&$'/.$##$.$&*)+*$#8%&%#&&%
-@1831_574_389/1
-CATGGCTATGCACCGGTTTGTAGCGTACTCGAGA
-+
-)$>/>8):2@:213;;.1)@3%64%+)<7)+$92
-@1831_574_575/1
-TTCTTGGCAAGCGCAGATTATGCGTTCCGCCTAG
-+
-?@>=?@>8@@@=@6*%&<='5@<<',0<=4*5/<
-@1831_574_592/1
-TCATTTACCACGTCAGGGTCGGAGTCATTCATTA
-+
-3-5)19,,<@>4067<2.-864346;9<1/;212
-@1831_574_617/1
-AAGCATCGGCGGGAGCGCAAGCTGGGAAGGTGCC
-+
->@?;>?=@==@>@=5?@+@:@40@><:0)')64-
-@1831_574_725/1
-GACAAGATGGCTATTATTTACAATCCGATCTGCA
-+
-'>?52+5=;4$6;<8.1<47*9+?7(+5;-).)4
-@1831_574_734/1
-CCTGTACGAAAGAACGTAGGCATGGGCTGGGGGG
-+
--&.$2&<*(-%):/)%5:)/%7+,9034*A.?70
-@1831_574_824/1
-AGCGCAAATTATGCGTTCCGCCTAGCGGAGAACT
-+
-@@@;;),+@<-<7;<&89??&29?<$2:A<);8?
-@1831_574_959/1
-CGCGCTAGGACTCGGCCCCAAGAGACGTTCCGCC
-+
-A=;+?@9;/<@;<8#&&/*%(%.0$0$2)+1$-1
-@1831_574_1062/1
-ACCGGTAATATAAGGCAACATGATTACGGCCACG
-+
-@821<//:136/8<1/5.427.;>288/0<1$)/
-@1831_574_1092/1
-GACTGGCGAAATCATCGCGGAAAAACCCCTATCA
-+
-8?.,98)03%#,,,(,++$'69'#9'7#';6.%2
-@1831_574_1103/1
-ATCTCCTGATTAGACATATCTCCGTAGCTCACGC
-+
-??>?@=>@@A<>?=@==<:?<;58'&&):+35'1
-@1831_574_1116/1
-CACCTCACGTGAGTATAGCAGCCCGAGCGTCACC
-+
-@++,)/)?./)%<)2>.==:8?&;44&/&,)/*4
-@1831_574_1194/1
-TTATCACATTTGGGGATCGGAAGGGACTACTTCG
-+
-5>;,??9@9@?@1@@=@3=@>@4?@@94?75/,6
-@1831_574_1204/1
-CTTACTGGTCTGCTGGACATATAGTGGCGATGAA
-+
-A5A5B@5:;@@,.9?A1?#.?;3),>82%)='7*
-@1831_574_1306/1
-ATTGCTTAGATCCAGTGGCGCTCAATACAACGGA
-+
-2.7&%''.$&#'%##$#'#%')')$'$%$,)'.1
-@1831_574_1387/1
-GTACTTCTCAATGCTGCACTACTATGTACGCCCC
-+
-?A??:@?@@9?@@?9C;:>&).,,);&'<&7(/'
-@1831_574_1431/1
-GACCAGTTTCAGGGCTAACCGTCCCTACTCGACC
-+
-7?>9BA897;+8*=6#6.+5&-#26$0.,5&'$1
-@1831_574_1560/1
-GGCGTCTTAGGATTGAAGAGGGCCTCCCACCCCC
-+
-))&65<4=>99@:597(1&;+&(%&4#,#&&&*$
-@1831_574_1591/1
-TGAGCACTTATGGCTAGGCGTAGGGGACCGTGAG
-+
-=<A><?@78@<=;@&@6>8:?,><&&<7>8(8+9
-@1831_574_1624/1
-ACGGGAAGGGCTGGAATCTACCCAGTAGGCATTG
-+
-<6.&(,7-+))7..'/;43.)927.(<85&13-)
-@1831_574_1826/1
-TACGTCGCGACCGAGCGTTATATAGTCTGACCCC
-+
-@<<,))459<?.+57'-'&6?1)(;1;0&%4,#$
-@1831_574_1903/1
-AGTGCAACATCTGCTTTGCTTATCAGCACACGGC
-+
-956?@>;7@@@8:@>8><=9>9>@2=71?1:6;/
-@1831_574_1961/1
-GTTTCACTTCGGTTATTAAGAAACCCAAATGGAA
-+
->-07-@>(2'@<#064@%5%@@6.&<<(9)=:47
-@1831_575_54/1
-TTTCTTATGGGTAGAACAGCTGCCACTGACTGAA
-+
-=@@68<2;<8;?@<>+9>7,,6972&57:4&9<8
-@1831_575_80/1
-TCTTTGGGTTTGGGGCAATTTGGTATGTTCGTCT
-+
-?5><@?/=5%(&.5)+#/0'/'>#$/'37#()6&
-@1831_575_192/1
-AACTACGCCCCTTAATTACACAGCGCGTTAGACC
-+
-:8<,9(.=/)#%8$,4'<,:)3/.'.5<,>-;7'
-@1831_575_197/1
-TTCGCCTACACTTAGATACCTCTTAAACTCAATG
-+
--:?463@A:88?6?437<=.2&1.;@67.4@%2,
-@1831_575_223/1
-ACGCACAAAGGAGCTCGGCGCATAGCAACGCAGA
-+
-?>?8?@:?;>+$'%&,+#$.--#%$1'&#-7$&'
-@1831_575_420/1
-CCCACATGGAAAACACTCACCGCCGAACAGAGCG
-+
-2?.>?(-''2+..@),$%1@;')1)?+)7.')..
-@1831_575_434/1
-ATCGCTGCGAGGTCACCCTGGTTACGCCCCTTCC
-+
-@@><@B@>=@@?>><@?;)@?;6.?=4,'';/3)
-@1831_575_444/1
-TAGGCGACCGTGAGGACAAGAGCTGTTGCCTTGA
-+
-2@@;<.=?@<+=:A<<@?<</>@><(<8>4&5;>
-@1831_575_459/1
-CTTATCAGCACACGGTTTACCAGTCCGACTCCAA
-+
-@@C@?A@@A@??A@@'6@@B'=;C@'4<=9,@1.
-@1831_575_506/1
-CGCAGAACCCGCACGCTTGTGCTCACCACTGTAC
-+
-?)2*5@3+.7=?A:8@,/&):@37/<89'+4*)*
-@1831_575_569/1
-AGCAGACTGCTGTAACACGGTGTGGTGTAAGGAT
-+
-'9-,@29+479%&>9#&08=>7#9>,69/+'*3)
-@1831_575_622/1
-CCAAATCCGGCCCAGTAAGTGTCCTGTCGCACCC
-+
-A8B=@@?<@?<>>=?96<497)<4/<':4+;74+
-@1831_575_644/1
-CTTGAATGGCGATCTCGTCGAGGAAATACCACTA
-+
-<8>.>&,+)8.10':5(/-62&*.=/%(.<&&18
-@1831_575_663/1
-GGCAACTTATCCGCATTGGTCCCACTGGAGCGCA
-+
-@@@@A</;A>@6>0792<5966:?;25+:><1,+
-@1831_575_681/1
-TCTCCTGATTAGACATATCACTGTTGAACACAGC
-+
-72?.)25;96-14'*.03'#4#++$)/8+%/((&
-@1831_575_711/1
-TATGTTCGTCCACGTCAGACGCGCAAAGTTGCGC
-+
-%+:2(#'1+.)&*45-#,<A-%4;>+))<;##*&
-@1831_575_730/1
-CACACAGGAACCATAGCGTATGTTATTCACCCCC
-+
-%8<%-')5,*1&=#)(1*1)->7$.,4'4'&'*&
-@1831_575_904/1
-ACCCGCTTAAAGACGTGAATTTTGCCTCCGCGCC
-+
-<><.689@@7@<54:4=@>69=:+6-=42;8<:#
-@1831_575_938/1
-TCATCAGGGAAGGCTAGGGGTTTACACTATTCGA
-+
-:@@:?@;=8;>=;;:=<93<4.;<6:2<9;4)87
-@1831_575_970/1
-TGACTCCTACAGTCTTTATAGTACCGAGGGAGGC
-+
-@=@=;@@><@@:9<:=?;>@=?9>>?@:2===<5
-@1831_575_991/1
-TTCGGCGATCCCCCCCACGGCGCGATGCCGCGCA
-+
->>;7???/4<:::,#&*%'$--5-#(7)&&,-)%
-@1831_575_1138/1
-TTGAAAGACCTGAACGCGATTTCATGTTTACTGC
-+
-=0;%1936+?96?,?5<:2>@6@<:;4>.7;*:1
-@1831_575_1157/1
-TCGCTGTTTAGATTTCGGGAGGGTACTTCAGTGC
-+
-B@B>?A?A@?9'?;?&8?@@6;<@=+<:99+965
-@1831_575_1180/1
-GAATTCACGGCAGTGTTATCACCGTTTCCTTCCA
-+
-<B>5?':/78?;1;55:997@@>94=7<186->7
-@1831_575_1283/1
-GGTGGAATACTAAGGACTAATGTGCTGTCTCTTT
-+
-C@A54><?A78@<?2>:#>=?@2>80:'?69.'7
-@1831_575_1302/1
-CGACTATTCGTTTCGTCTAGAACGTGACACTAGC
-+
-12>/#2'&-2&%'7+$%*#$/1(&&12/$,2,,*
-@1831_575_1310/1
-CTTGCTCTCGAGCTATGCCTCAGGACACGCCCTT
-+
-<<>663?99@(@7=11@:@@/7??<@<;>'3-7;
-@1831_575_1321/1
-CAACACAGTTGAACGGCGGAGGAGTAAAGATGCG
-+
-;B@?@>=A@<A?>@>?6>@5>'4@9?)7@7?/89
-@1831_575_1373/1
-CGCTACCGGTTCCAACGGCTGCCTGACTCGCGGA
-+
-@@@>@;=9<@??7@>@:@;@;17?630/7=4,2<
-@1831_575_1419/1
-TGGGGAATATAACAGCGTAGCGTTGAACACTAGA
-+
-//3->&-.->%11/@&/&7:<,-1=,+2<6'%&<
-@1831_575_1436/1
-TGCATCTAGCGCGTATTGCGAGCCTTACGGATTC
-+
-2@=;39*3<*4<:>52>>9'7:<='0=>1'136<
-@1831_575_1442/1
-TCTGACAAGGTTCCTGCACCTGCGTCTGAGAGGG
-+
->58<?7>+1B6-/9<<:5?>A:1@?539.@4/1>
-@1831_575_1454/1
-CCTCCTAACCACGAGCCGAGGGGTCTCTGCCCCT
-+
-4=?8=6589=0:A=:?>6<;@/,4+-6+/'.,(,
-@1831_575_1500/1
-CACAAAAGGTCCCTACCTGTCTACCCTACATAGC
-+
-?@@?A@?8<6<:985=99999==B3<5<<,7?>9
-@1831_575_1535/1
-CTCGACGATATGACCGCCAGCCACTTAACTCCGC
-+
-B=@<@@B?:A@@=>@?68@=?@5?7;:6<<;>5<
-@1831_575_1724/1
-TCGTAAGTGTTAAGGAGCTGTGTACAAAACAACA
-+
-<B.+@),2*.%)))4%2@;7#%(%+$8))85%&5
-@1831_575_1829/1
-CATTTGCTGACCCTGCGTAGTTTAGTCTCACAGC
-+
-2(*'%.3$+7)@&%$'3*+*#/#/*+0.=&#)+0
-@1831_575_1898/1
-CTTACCATATCATCTCAACCCATAACAGCACTTA
-+
-B>@@&1/))'40)%#8/.%#8$((#;4'$'63,,
-@1831_575_1964/1
-GACAGACCATGAGGCTGAAGACTACTAAGTGCGT
-+
->39)@2<2/@+9?2=&)>>@*62=5&2<42.'?+
-@1831_576_32/1
-TACGCAACGATTTATGGCCTTATAATTGAGGCCA
-+
-<>?>?=7<2)522;><<@40@>704<>5=23@+&
-@1831_576_74/1
-ACATTCTGCAGTGGGACAGAGCGGTACGCCGCAA
-+
-=@@?@>(??<B5?@@@9<@><+><;@';>6961?
-@1831_576_86/1
-ATGAAAACGCATTAGGACAACCATAATGGCCTCA
-+
-811)2:*.++5</:3+43924*))/:,6&29)2/
-@1831_576_89/1
-GCTGTTTGATTTGAGAAGAGGAATTAAGCGCCGA
-+
-)69+,'.4=-,>/>(*$#)3030*'(,%)2##$,
-@1831_576_266/1
-ATGGGGTCACTCGACCTAATCCCGCGGCTTTGGT
-+
-@@?=;<?7=@>9,>@1$&&89$/:>7'3178%&6
-@1831_576_327/1
-GCCGTTCTACTCTAGCTGCAACTTGCGATTGCTA
-+
-@?@6@@;<@?><@>==3@:==<3@@>53<9><6=
-@1831_576_331/1
-GACGCTTTACTCCGGTAGTACCGTGCCGTTTATA
-+
--2)+(*.*1/;5%.-9&#/1'+($*$##()%/$.
-@1831_576_387/1
-ACACGCCATGATCCGATAAGAAGGGAACGTAAGG
-+
-8).$5#1#*%.$##.*#$%##-%,+,1#&%.%))
-@1831_576_406/1
-AGGTCTTACAGCACGGGGCTGAGCGCATCTGACC
-+
-4<>%%14:*4656)&<251&2+3#&19,6&4>5(
-@1831_576_449/1
-CTCGAACCGCGGGGTCCAAAGACTGCTGCAAGGA
-+
-+'&'.,,$/+.)$$8&%#+?&,#)-&###7,+#*
-@1831_576_519/1
-TACCTGCCTACTACTTGCTCTCGAGCTATGCCTC
-+
-=46<97@>2/6?;2<4A881>9121+<1/4.9+7
-@1831_576_603/1
-CAATATGTCTTAGTCGTGACTCGGCAACTTATCC
-+
-@46=@C.??<A79@@;-<@@>29B?>55<B7598
-@1831_576_655/1
-GAACAGTCTATAGTGGCGGGAATCTCGTCGTCAG
-+
-@AA9@@<6*>@@5/<@>9'=;>7+@?9>/9;+,%
-@1831_576_677/1
-TTTACTCAGTTGATACATCACTGTAGCACATAGG
-+
-290&/*0#&'&,.2'#&*$&('#-%($*#%$)#%
-@1831_576_718/1
-CGTGCCTTTCAGGGTCTTTTCTGGTCTGGTCGCT
-+
-4###$0###%(#########,####%####$###
-@1831_576_722/1
-CGTATGATGGCGAGTCTTTATAATCCAATCTGAA
-+
-*,-,##.)*&(*1%*(%(-2#+)-#.&-#%%$')
-@1831_576_754/1
-AGGCGTCCTGCATCGACCGTTCTATCCGCTTAGA
-+
-4//#(.$)'',>($<,##%((,#5?#0*%1*
-@1831_576_815/1
-TAGGCCTGATATGACACGATCACAGTGCAACATC
-+
-3>@?9>@?B=>=;>A???=>:25=4.25?6<57.
-@1831_576_882/1
-TGTAAGACGGTGAGGTGTAAGGATCAGACCACGG
-+
-26?8?@:4>@>96??<<=5'1<>9846=<9<1>8
-@1831_576_898/1
-AGTACTGTCGCGCATTGGGGTCCTGGTCGTTGCT
-+
-@@C2?C>?<>@886B?;?.??87=B<8<15??=.
-@1831_576_923/1
-CTGGACATGAGAGACTGCACGCGGTACACGTCGG
-+
-6.51=;.699<96>;;49<;;11;<@59:9=647
-@1831_576_930/1
-CTGGCATGTACGTCCATGTCAGACGAGCAGAACT
-+
-#*0.2&.:((#'14'##-)#%$$2%#$/1&#%/#
-@1831_576_1019/1
-GATGCGCGCTGTCATGGCATCGAACCATCGGTCG
-+
-<$>$,1,&++&@,.)'+/+#9'69/6'2(+-'9-
-@1831_576_1068/1
-AAGAGTGACTCACTTACCGGGATGCGATGGAGCC
-+
->><=4?;@7=??9?;9>5@9?:8@:=5';7;'#4
-@1831_576_1131/1
-AGTTCGGGAAGGGCTGGAATCTACCCAGTAGGCA
-+
-04@#@/@,4>9?2+?1571@',>=;(759;*92<
-@1831_576_1168/1
-CACTTAACTCCGCTGTCGGAAGCCTTACAAGACA
-+
-@CC6@@2?9=>7?;76<;467@;9,0%26'',4$
-@1831_576_1207/1
-CAACCTGACTAAACGGGGATACGCTGGCGCTACA
-+
-$>2,(&?4?(,@:<&,@>?$&:8A%%=0.%,597
-@1831_576_1289/1
-TAGCGCAAGTCCAGAATGTTCATAGACTCGCGAT
-+
-9<>1B@@;7@@663==28,5':8<<,.=2>>.50
-@1831_576_1329/1
-CCAATAGCAGAGACCTAATAGGAAACGAAAGCAA
-+
->&0,870/A@@/5.;=;:'&@3'&$$%,+#($&2
-@1831_576_1367/1
-GGTCTCATCCGTTCCAATCGGGACTTTGACCAGT
-+
-?@@<>@@=@<@<=@>@??9:?<=>=<8;59@787
-@1831_576_1416/1
-TAGCGTTCAACGTCGATCTCATCTTGCCGATGGC
-+
-';?..1.<@'.=+6.5?7<0-?7;(%=>56.98@
-@1831_576_1461/1
-GAGGGGCGGCCCGGTTCAAGCAGGTAAGCAACAA
-+
-1&74#(#(&##$#,'###%#%%#*#&%%##%%%'
-@1831_576_1605/1
-AGTGCAACATCTGCTTTGCTTATCAGCACACGGC
-+
-<@C@@>1;@:;<<@@9@???9<3?5-21=4877,
-@1831_576_1664/1
-CGCGCACAACTCGCCATGATACGACAAGACCCGA
-+
-@?>?@=A:@@>@='=<>=).>=9*8)(7#/++;)
-@1831_576_1671/1
-GTCTTTGTAAGCCTGGCCTGGTCAGGTCTGGTCT
-+
-@?@5>@@8&8?25#&)&5&&)15&&,&4%&,&6%
-@1831_576_1729/1
-CGTTTCGTCTACAACGTGACACTAGCACAGTATA
-+
-?@?<?<@>A?/==?>?7>?@8<?@>99;><+0=>
-@1831_576_1880/1
-TATGCGCTGTTGAGCTTACAACTCACTAGCGAAT
-+
-515/792,:,7/%/05,%$):+#8%2(1754))3
-@1831_576_1982/1
-AATGTCGTCAGACGACTTTGGCGCGAAAACCATA
-+
-@@?@,A><@9@=?@9B=8<6@@6@2<A?>.7<+@
-@1831_576_1987/1
-AAGGTCTTCTGTCGGCGCTGGACTGAACACCTGA
-+
-##()(#&##)%)/-#%$11#%3>'##&$,#$$'+
-@1831_576_2014/1
-CCGTGACACACAATGCCGGCCCCAGCCTAGCAAT
-+
-@@9,B29-5>'?,+?79+/A';'2@'5&/9,6&1
-@1831_576_2028/1
-ACTCGCCGCATCCCCGAGTGACGCTCGAGACCAA
-+
-<>9>5'2(&707.8#&&39,0%7/#(#,*%&5*+
-@1831_577_40/1
-CCCCGCGTTACGAACGAGAGAAATCTCTTATAAT
-+
-2/4('.')(<*?#$)%&<,/39<(.2,+<=@611
-@1831_577_119/1
-TCCCACAAGCCATTGACATGCTCGCTCTAAACAG
-+
->?C11)-1/)#;#/,850*+.+$$5550+%-.40
-@1831_577_133/1
-TGCTTGTACGGTCTAACGGGGTATGGGTTTCTGG
-+
-4@>>?=1?:+>@07@@><>@*<+1@15)96'2$)
-@1831_577_255/1
-ATTGAGGCCAAGATAATTGAGGAGAGAGAAGGTG
-+
-<=87@>69%**#&#-+$.#&&#+$-+%&%.,%5#
-@1831_577_281/1
-TATGTACGTCGCGTACACTCCGGGGCCCGCAAAA
-+
--:B;8@=;>7@>4?=?+659?;5<7?;9@8(>:?
-@1831_577_288/1
-CATCCGAGGCTATCAAGGCGTAAGCACTGACCTA
-+
-;/79??&=B::298*6.7/+4&21,7,6?.7#'6
-@1831_577_322/1
-GAATGCTGGAGTACATTATGACAAACTATCGGAG
-+
-=;>4506;255464-<#7+194&2<?65968)7/
-@1831_577_362/1
-CGATTAGTTACCACTCGTATTCGCACGCCCAGGA
-+
-2B?:@?@<?958=,3:,90:&'-99,6<5.($+6
-@1831_577_382/1
-GTCGCGTATTCCCCGATGCTATGTAGACTTGCAA
-+
-2957/:1))=76(*24;,3+:<.&.&-=1=2/5*
-@1831_577_464/1
-TAGAGGCACCCTAACTCAGGGCTTTCTCGATTAG
-+
-=<7/<826)>#.'&4204+5#/041.7*91&756
-@1831_577_488/1
-TGAATAGTTATGGCCAGAATGTCTGCACCGATAC
-+
-48.,*>6566<?8=<=<2>6;94>;=9>@8924@
-@1831_577_511/1
-GGTGCTTATCAGTTCTTTCTCGGGACTTGTATTT
-+
-7/+&$:<7%6,$$%'%/+)#$7((&*3>16'0/+
-@1831_577_545/1
-ACCGCTCTTTGGGTATGGGGCAATCTGGCATGTT
-+
-><<9?<>?A<481@<@8==@76/61<95.5988-
-@1831_577_559/1
-GTGCCACTATGTTCGACAGACCCTAAGGCGGAAG
-+
-<@;??@>@?/2<.@1=>12=61/;=?.&2+92)'
-@1831_577_562/1
-GTTCCACTACGTTCCACGCAAAGGAATCCGAATC
-+
-((&*&0%)1%)#($2-,***%/-,,))&,-.1'*
-@1831_577_637/1
-GCCTTCGCGGGAGCATATCAGTCGATACATCCCA
-+
--,4#>:-6+:8,&(5;3=0>7=68&1/9&'?;4,
-@1831_577_641/1
-TATCTACCACCGCGGTGGCGCGAGAATGCTCCCT
-+
-47;/':A;;5?:72,(=),#*?+.#&7$8#%7/'
-@1831_577_692/1
-CCGGTGAGAATTACATCGCGAGTACGCCCAAGGA
-+
-B,@?@B(@A?@+@@>@+?=>@'=<@<=<9=?75<
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_wrapper_in2.fastq
--- a/test-data/bwa_wrapper_in2.fastq	Fri Jan 22 08:47:05 2010 -0500
+++ b/test-data/bwa_wrapper_in2.fastq	Fri Jan 22 10:49:38 2010 -0500
@@ -1,576 +1,4 @@
-@1831_573_1004/1
-AATACTTTCGGCGCCCTAAACCAGCTCACTGGGG
-+
-><C&&9952+C>5<.?<79,=42<292:<(9/-7
-@1831_573_1050/1
-TTTATGGGTATGGCCGCTCACAGGCCAGCGGCCT
-+
-;@@17?@=>7??@A8?==@4A?A4)&+.'&+'1,
-@1831_573_1067/1
-AAGTATGAGTCATTTACCGGGATGCGAAGAAAAG
-+
-++#%(',%/$,+&1#&),)&+'*'*%#$&#%('$
-@1831_573_1219/1
-CGCCCTATAATAATACAGCGCGTTAGACCGCTCA
-+
-@@=4/+)5)408?'665>*/5?<61';<3,:,5-
-@1831_573_1242/1
-GCTGAATCGCACCTAGCAACTATAGCCGGGCCGC
-+
->>::>17=A5?@@=;7A=;2.60>82<8=74+;;
-@1831_573_1333/1
-AGAATCGTTACCACACACTGCGTCTGGGTATCCG
-+
-='@#%3=.>)/34*117,,/6-4+.9742456<)
-@1831_573_1362/1
-CGATCTCAACCAGGTCCGCGCCCACCCCTGCCTC
-+
-B@@?@@?@C@BA?@>@<@8A@?@'.8'?17:,+?
-@1831_573_1448/1
-TCACGCCGGTCCTTGACTGGCGTTCTCTTCGAGG
-+
-7=A)?,.@A@@:@@<=/7)@<-#8662%9613&+
-@1831_573_1490/1
-CTCGTCATGTTACGCAAAGGCACGTCACAGCACC
-+
-@@@?,@??@$><=>+%/*>*1,)?26&12'9%7.
-@1831_573_1523/1
-ATGGAACGGAACGGGTGAGGAGGGGAACGTAGGG
-+
-,//*,#8''.6''6'2&27/80)%�'%#*,2'
-@1831_573_1578/1
-CGAGTAGCAAACAAGACGCCAATCCAGGCGACCC
-+
-?=@<@C@?@@??=>@;7<<8<694)3511(+1<.
-@1831_573_1647/1
-AGGGGTTTACACTATTCGACTGGGTGAGAGGCGT
-+
-?@@<@@???;A==@@;9?@?3=;6.4/;6:=/;4
-@1831_573_1684/1
-TTCAACTGCGTCGACGTAGCGCACAGGCGTCCGT
-+
->1:8<@39@@??9=;@@<>?@@<;<?7>76?9>?
-@1831_573_1769/1
-TGGACGTATAGTGGCGATGAGCATGTAGGTTCTC
-+
-54749&&767%/7;3$-7;3#,3//#,45/#&06
-@1831_573_1853/1
-CAAAACGCCCGGGGCCTCACATGCGCGGCAGTTC
-+
-4./B@@72B+/4?@?7?+@9/+99.')2<2&)2&
-@1831_573_1943/1
-ATAACGTATGGCAGTGAACGGGCGGAACCTGCCC
-+
->/*1,),@-)'0*>5'$/?6@/.&?8/(')A43,
-@1831_573_1977/1
-GGCGTAGGGCTCATTGTGCAAGTATCCGACCTCC
-+
-@?6@8@@9A@=4633A7?9?<3:+7>'@%@?%32
-@1831_574_109/1
-TCGGTTGCGTTACTTCATGGGAGGGCTTTACATT
-+
-7651#4817>@65<2:84716=788<1995.7?6
-@1831_574_148/1
-CGAACCTCGTATAACGGAGTAGTCGGAAACAGTC
-+
-;->3;;3>//>0;;7=,=4-4/+>029<9<624;
-@1831_574_185/1
-CCGTTTTGCCTAGTAATGCTCGGCGCAGCGTCGC
-+
-<4;%%@7>#*>97%6;+8$#<07%1372$%<54#
-@1831_574_243/1
-AGGCACCGTAACTCAGGACATTCTCGATTAGTTA
-+
-@@@95@=9?*><45$<@<4%@9?7#=?>7&>?97
-@1831_574_257/1
-ATACCTTCCAAAGCAATAGAATAAAAAACAGTAC
-+
->>B>)@?>B@B?@1%*%,#+00.'(+&5&%#$3&
-@1831_574_293/1
-TGCTGCAAATAAACATACAGCCTTCTAATGACTA
-+
-')7'.*%#&$'/.$##$.$&*)+*$#8%&%#&&%
-@1831_574_389/1
-CATGGCTATGCACCGGTTTGTAGCGTACTCGAGA
-+
-)$>/>8):2@:213;;.1)@3%64%+)<7)+$92
-@1831_574_575/1
-TTCTTGGCAAGCGCAGATTATGCGTTCCGCCTAG
-+
-?@>=?@>8@@@=@6*%&<='5@<<',0<=4*5/<
-@1831_574_592/1
-TCATTTACCACGTCAGGGTCGGAGTCATTCATTA
-+
-3-5)19,,<@>4067<2.-864346;9<1/;212
-@1831_574_617/1
-AAGCATCGGCGGGAGCGCAAGCTGGGAAGGTGCC
-+
->@?;>?=@==@>@=5?@+@:@40@><:0)')64-
-@1831_574_725/1
-GACAAGATGGCTATTATTTACAATCCGATCTGCA
-+
-'>?52+5=;4$6;<8.1<47*9+?7(+5;-).)4
-@1831_574_734/1
-CCTGTACGAAAGAACGTAGGCATGGGCTGGGGGG
-+
--&.$2&<*(-%):/)%5:)/%7+,9034*A.?70
-@1831_574_824/1
-AGCGCAAATTATGCGTTCCGCCTAGCGGAGAACT
-+
-@@@;;),+@<-<7;<&89??&29?<$2:A<);8?
-@1831_574_959/1
-CGCGCTAGGACTCGGCCCCAAGAGACGTTCCGCC
-+
-A=;+?@9;/<@;<8#&&/*%(%.0$0$2)+1$-1
-@1831_574_1062/1
-ACCGGTAATATAAGGCAACATGATTACGGCCACG
-+
-@821<//:136/8<1/5.427.;>288/0<1$)/
-@1831_574_1092/1
-GACTGGCGAAATCATCGCGGAAAAACCCCTATCA
-+
-8?.,98)03%#,,,(,++$'69'#9'7#';6.%2
-@1831_574_1103/1
-ATCTCCTGATTAGACATATCTCCGTAGCTCACGC
-+
-??>?@=>@@A<>?=@==<:?<;58'&&):+35'1
-@1831_574_1116/1
-CACCTCACGTGAGTATAGCAGCCCGAGCGTCACC
-+
-@++,)/)?./)%<)2>.==:8?&;44&/&,)/*4
-@1831_574_1194/1
-TTATCACATTTGGGGATCGGAAGGGACTACTTCG
-+
-5>;,??9@9@?@1@@=@3=@>@4?@@94?75/,6
-@1831_574_1204/1
-CTTACTGGTCTGCTGGACATATAGTGGCGATGAA
-+
-A5A5B@5:;@@,.9?A1?#.?;3),>82%)='7*
-@1831_574_1306/1
-ATTGCTTAGATCCAGTGGCGCTCAATACAACGGA
-+
-2.7&%''.$&#'%##$#'#%')')$'$%$,)'.1
-@1831_574_1387/1
-GTACTTCTCAATGCTGCACTACTATGTACGCCCC
-+
-?A??:@?@@9?@@?9C;:>&).,,);&'<&7(/'
-@1831_574_1431/1
-GACCAGTTTCAGGGCTAACCGTCCCTACTCGACC
-+
-7?>9BA897;+8*=6#6.+5&-#26$0.,5&'$1
-@1831_574_1560/1
-GGCGTCTTAGGATTGAAGAGGGCCTCCCACCCCC
-+
-))&65<4=>99@:597(1&;+&(%&4#,#&&&*$
-@1831_574_1591/1
-TGAGCACTTATGGCTAGGCGTAGGGGACCGTGAG
-+
-=<A><?@78@<=;@&@6>8:?,><&&<7>8(8+9
-@1831_574_1624/1
-ACGGGAAGGGCTGGAATCTACCCAGTAGGCATTG
-+
-<6.&(,7-+))7..'/;43.)927.(<85&13-)
-@1831_574_1826/1
-TACGTCGCGACCGAGCGTTATATAGTCTGACCCC
-+
-@<<,))459<?.+57'-'&6?1)(;1;0&%4,#$
-@1831_574_1903/1
-AGTGCAACATCTGCTTTGCTTATCAGCACACGGC
-+
-956?@>;7@@@8:@>8><=9>9>@2=71?1:6;/
-@1831_574_1961/1
-GTTTCACTTCGGTTATTAAGAAACCCAAATGGAA
-+
->-07-@>(2'@<#064@%5%@@6.&<<(9)=:47
-@1831_575_54/1
-TTTCTTATGGGTAGAACAGCTGCCACTGACTGAA
-+
-=@@68<2;<8;?@<>+9>7,,6972&57:4&9<8
-@1831_575_80/1
-TCTTTGGGTTTGGGGCAATTTGGTATGTTCGTCT
-+
-?5><@?/=5%(&.5)+#/0'/'>#$/'37#()6&
-@1831_575_192/1
-AACTACGCCCCTTAATTACACAGCGCGTTAGACC
-+
-:8<,9(.=/)#%8$,4'<,:)3/.'.5<,>-;7'
-@1831_575_197/1
-TTCGCCTACACTTAGATACCTCTTAAACTCAATG
-+
--:?463@A:88?6?437<=.2&1.;@67.4@%2,
-@1831_575_223/1
-ACGCACAAAGGAGCTCGGCGCATAGCAACGCAGA
-+
-?>?8?@:?;>+$'%&,+#$.--#%$1'&#-7$&'
-@1831_575_420/1
-CCCACATGGAAAACACTCACCGCCGAACAGAGCG
-+
-2?.>?(-''2+..@),$%1@;')1)?+)7.')..
-@1831_575_434/1
-ATCGCTGCGAGGTCACCCTGGTTACGCCCCTTCC
-+
-@@><@B@>=@@?>><@?;)@?;6.?=4,'';/3)
-@1831_575_444/1
-TAGGCGACCGTGAGGACAAGAGCTGTTGCCTTGA
-+
-2@@;<.=?@<+=:A<<@?<</>@><(<8>4&5;>
-@1831_575_459/1
-CTTATCAGCACACGGTTTACCAGTCCGACTCCAA
-+
-@@C@?A@@A@??A@@'6@@B'=;C@'4<=9,@1.
-@1831_575_506/1
-CGCAGAACCCGCACGCTTGTGCTCACCACTGTAC
-+
-?)2*5@3+.7=?A:8@,/&):@37/<89'+4*)*
-@1831_575_569/1
-AGCAGACTGCTGTAACACGGTGTGGTGTAAGGAT
-+
-'9-,@29+479%&>9#&08=>7#9>,69/+'*3)
-@1831_575_622/1
-CCAAATCCGGCCCAGTAAGTGTCCTGTCGCACCC
-+
-A8B=@@?<@?<>>=?96<497)<4/<':4+;74+
-@1831_575_644/1
-CTTGAATGGCGATCTCGTCGAGGAAATACCACTA
-+
-<8>.>&,+)8.10':5(/-62&*.=/%(.<&&18
-@1831_575_663/1
-GGCAACTTATCCGCATTGGTCCCACTGGAGCGCA
-+
-@@@@A</;A>@6>0792<5966:?;25+:><1,+
-@1831_575_681/1
-TCTCCTGATTAGACATATCACTGTTGAACACAGC
-+
-72?.)25;96-14'*.03'#4#++$)/8+%/((&
-@1831_575_711/1
-TATGTTCGTCCACGTCAGACGCGCAAAGTTGCGC
-+
-%+:2(#'1+.)&*45-#,<A-%4;>+))<;##*&
-@1831_575_730/1
-CACACAGGAACCATAGCGTATGTTATTCACCCCC
-+
-%8<%-')5,*1&=#)(1*1)->7$.,4'4'&'*&
-@1831_575_904/1
-ACCCGCTTAAAGACGTGAATTTTGCCTCCGCGCC
-+
-<><.689@@7@<54:4=@>69=:+6-=42;8<:#
-@1831_575_938/1
-TCATCAGGGAAGGCTAGGGGTTTACACTATTCGA
-+
-:@@:?@;=8;>=;;:=<93<4.;<6:2<9;4)87
-@1831_575_970/1
-TGACTCCTACAGTCTTTATAGTACCGAGGGAGGC
-+
-@=@=;@@><@@:9<:=?;>@=?9>>?@:2===<5
-@1831_575_991/1
-TTCGGCGATCCCCCCCACGGCGCGATGCCGCGCA
-+
->>;7???/4<:::,#&*%'$--5-#(7)&&,-)%
-@1831_575_1138/1
-TTGAAAGACCTGAACGCGATTTCATGTTTACTGC
-+
-=0;%1936+?96?,?5<:2>@6@<:;4>.7;*:1
-@1831_575_1157/1
-TCGCTGTTTAGATTTCGGGAGGGTACTTCAGTGC
-+
-B@B>?A?A@?9'?;?&8?@@6;<@=+<:99+965
-@1831_575_1180/1
-GAATTCACGGCAGTGTTATCACCGTTTCCTTCCA
-+
-<B>5?':/78?;1;55:997@@>94=7<186->7
-@1831_575_1283/1
-GGTGGAATACTAAGGACTAATGTGCTGTCTCTTT
-+
-C@A54><?A78@<?2>:#>=?@2>80:'?69.'7
-@1831_575_1302/1
-CGACTATTCGTTTCGTCTAGAACGTGACACTAGC
-+
-12>/#2'&-2&%'7+$%*#$/1(&&12/$,2,,*
-@1831_575_1310/1
-CTTGCTCTCGAGCTATGCCTCAGGACACGCCCTT
-+
-<<>663?99@(@7=11@:@@/7??<@<;>'3-7;
-@1831_575_1321/1
-CAACACAGTTGAACGGCGGAGGAGTAAAGATGCG
-+
-;B@?@>=A@<A?>@>?6>@5>'4@9?)7@7?/89
-@1831_575_1373/1
-CGCTACCGGTTCCAACGGCTGCCTGACTCGCGGA
-+
-@@@>@;=9<@??7@>@:@;@;17?630/7=4,2<
-@1831_575_1419/1
-TGGGGAATATAACAGCGTAGCGTTGAACACTAGA
-+
-//3->&-.->%11/@&/&7:<,-1=,+2<6'%&<
-@1831_575_1436/1
-TGCATCTAGCGCGTATTGCGAGCCTTACGGATTC
-+
-2@=;39*3<*4<:>52>>9'7:<='0=>1'136<
-@1831_575_1442/1
-TCTGACAAGGTTCCTGCACCTGCGTCTGAGAGGG
-+
->58<?7>+1B6-/9<<:5?>A:1@?539.@4/1>
-@1831_575_1454/1
-CCTCCTAACCACGAGCCGAGGGGTCTCTGCCCCT
-+
-4=?8=6589=0:A=:?>6<;@/,4+-6+/'.,(,
-@1831_575_1500/1
-CACAAAAGGTCCCTACCTGTCTACCCTACATAGC
-+
-?@@?A@?8<6<:985=99999==B3<5<<,7?>9
-@1831_575_1535/1
-CTCGACGATATGACCGCCAGCCACTTAACTCCGC
-+
-B=@<@@B?:A@@=>@?68@=?@5?7;:6<<;>5<
-@1831_575_1724/1
-TCGTAAGTGTTAAGGAGCTGTGTACAAAACAACA
-+
-<B.+@),2*.%)))4%2@;7#%(%+$8))85%&5
-@1831_575_1829/1
-CATTTGCTGACCCTGCGTAGTTTAGTCTCACAGC
-+
-2(*'%.3$+7)@&%$'3*+*#/#/*+0.=&#)+0
-@1831_575_1898/1
-CTTACCATATCATCTCAACCCATAACAGCACTTA
-+
-B>@@&1/))'40)%#8/.%#8$((#;4'$'63,,
-@1831_575_1964/1
-GACAGACCATGAGGCTGAAGACTACTAAGTGCGT
-+
->39)@2<2/@+9?2=&)>>@*62=5&2<42.'?+
-@1831_576_32/1
-TACGCAACGATTTATGGCCTTATAATTGAGGCCA
-+
-<>?>?=7<2)522;><<@40@>704<>5=23@+&
-@1831_576_74/1
-ACATTCTGCAGTGGGACAGAGCGGTACGCCGCAA
-+
-=@@?@>(??<B5?@@@9<@><+><;@';>6961?
-@1831_576_86/1
-ATGAAAACGCATTAGGACAACCATAATGGCCTCA
-+
-811)2:*.++5</:3+43924*))/:,6&29)2/
-@1831_576_89/1
-GCTGTTTGATTTGAGAAGAGGAATTAAGCGCCGA
-+
-)69+,'.4=-,>/>(*$#)3030*'(,%)2##$,
-@1831_576_266/1
-ATGGGGTCACTCGACCTAATCCCGCGGCTTTGGT
-+
-@@?=;<?7=@>9,>@1$&&89$/:>7'3178%&6
-@1831_576_327/1
-GCCGTTCTACTCTAGCTGCAACTTGCGATTGCTA
-+
-@?@6@@;<@?><@>==3@:==<3@@>53<9><6=
-@1831_576_331/1
-GACGCTTTACTCCGGTAGTACCGTGCCGTTTATA
-+
--2)+(*.*1/;5%.-9&#/1'+($*$##()%/$.
-@1831_576_387/1
-ACACGCCATGATCCGATAAGAAGGGAACGTAAGG
-+
-8).$5#1#*%.$##.*#$%##-%,+,1#&%.%))
-@1831_576_406/1
-AGGTCTTACAGCACGGGGCTGAGCGCATCTGACC
-+
-4<>%%14:*4656)&<251&2+3#&19,6&4>5(
-@1831_576_449/1
-CTCGAACCGCGGGGTCCAAAGACTGCTGCAAGGA
-+
-+'&'.,,$/+.)$$8&%#+?&,#)-&###7,+#*
-@1831_576_519/1
-TACCTGCCTACTACTTGCTCTCGAGCTATGCCTC
-+
-=46<97@>2/6?;2<4A881>9121+<1/4.9+7
-@1831_576_603/1
-CAATATGTCTTAGTCGTGACTCGGCAACTTATCC
-+
-@46=@C.??<A79@@;-<@@>29B?>55<B7598
-@1831_576_655/1
-GAACAGTCTATAGTGGCGGGAATCTCGTCGTCAG
-+
-@AA9@@<6*>@@5/<@>9'=;>7+@?9>/9;+,%
-@1831_576_677/1
-TTTACTCAGTTGATACATCACTGTAGCACATAGG
-+
-290&/*0#&'&,.2'#&*$&('#-%($*#%$)#%
-@1831_576_718/1
-CGTGCCTTTCAGGGTCTTTTCTGGTCTGGTCGCT
-+
-4###$0###%(#########,####%####$###
-@1831_576_722/1
-CGTATGATGGCGAGTCTTTATAATCCAATCTGAA
-+
-*,-,##.)*&(*1%*(%(-2#+)-#.&-#%%$')
-@1831_576_754/1
-AGGCGTCCTGCATCGACCGTTCTATCCGCTTAGA
-+
-4//#(.$)'',>($<,##%((,#5?#0*%1*
-@1831_576_815/1
-TAGGCCTGATATGACACGATCACAGTGCAACATC
-+
-3>@?9>@?B=>=;>A???=>:25=4.25?6<57.
-@1831_576_882/1
-TGTAAGACGGTGAGGTGTAAGGATCAGACCACGG
-+
-26?8?@:4>@>96??<<=5'1<>9846=<9<1>8
-@1831_576_898/1
-AGTACTGTCGCGCATTGGGGTCCTGGTCGTTGCT
-+
-@@C2?C>?<>@886B?;?.??87=B<8<15??=.
-@1831_576_923/1
-CTGGACATGAGAGACTGCACGCGGTACACGTCGG
-+
-6.51=;.699<96>;;49<;;11;<@59:9=647
-@1831_576_930/1
-CTGGCATGTACGTCCATGTCAGACGAGCAGAACT
-+
-#*0.2&.:((#'14'##-)#%$$2%#$/1&#%/#
-@1831_576_1019/1
-GATGCGCGCTGTCATGGCATCGAACCATCGGTCG
-+
-<$>$,1,&++&@,.)'+/+#9'69/6'2(+-'9-
-@1831_576_1068/1
-AAGAGTGACTCACTTACCGGGATGCGATGGAGCC
-+
->><=4?;@7=??9?;9>5@9?:8@:=5';7;'#4
-@1831_576_1131/1
-AGTTCGGGAAGGGCTGGAATCTACCCAGTAGGCA
-+
-04@#@/@,4>9?2+?1571@',>=;(759;*92<
-@1831_576_1168/1
-CACTTAACTCCGCTGTCGGAAGCCTTACAAGACA
-+
-@CC6@@2?9=>7?;76<;467@;9,0%26'',4$
-@1831_576_1207/1
-CAACCTGACTAAACGGGGATACGCTGGCGCTACA
-+
-$>2,(&?4?(,@:<&,@>?$&:8A%%=0.%,597
-@1831_576_1289/1
-TAGCGCAAGTCCAGAATGTTCATAGACTCGCGAT
-+
-9<>1B@@;7@@663==28,5':8<<,.=2>>.50
-@1831_576_1329/1
-CCAATAGCAGAGACCTAATAGGAAACGAAAGCAA
-+
->&0,870/A@@/5.;=;:'&@3'&$$%,+#($&2
-@1831_576_1367/1
-GGTCTCATCCGTTCCAATCGGGACTTTGACCAGT
-+
-?@@<>@@=@<@<=@>@??9:?<=>=<8;59@787
-@1831_576_1416/1
-TAGCGTTCAACGTCGATCTCATCTTGCCGATGGC
-+
-';?..1.<@'.=+6.5?7<0-?7;(%=>56.98@
-@1831_576_1461/1
-GAGGGGCGGCCCGGTTCAAGCAGGTAAGCAACAA
-+
-1&74#(#(&##$#,'###%#%%#*#&%%##%%%'
-@1831_576_1605/1
-AGTGCAACATCTGCTTTGCTTATCAGCACACGGC
-+
-<@C@@>1;@:;<<@@9@???9<3?5-21=4877,
-@1831_576_1664/1
-CGCGCACAACTCGCCATGATACGACAAGACCCGA
-+
-@?>?@=A:@@>@='=<>=).>=9*8)(7#/++;)
-@1831_576_1671/1
-GTCTTTGTAAGCCTGGCCTGGTCAGGTCTGGTCT
-+
-@?@5>@@8&8?25#&)&5&&)15&&,&4%&,&6%
-@1831_576_1729/1
-CGTTTCGTCTACAACGTGACACTAGCACAGTATA
-+
-?@?<?<@>A?/==?>?7>?@8<?@>99;><+0=>
-@1831_576_1880/1
-TATGCGCTGTTGAGCTTACAACTCACTAGCGAAT
-+
-515/792,:,7/%/05,%$):+#8%2(1754))3
-@1831_576_1982/1
-AATGTCGTCAGACGACTTTGGCGCGAAAACCATA
-+
-@@?@,A><@9@=?@9B=8<6@@6@2<A?>.7<+@
-@1831_576_1987/1
-AAGGTCTTCTGTCGGCGCTGGACTGAACACCTGA
-+
-##()(#&##)%)/-#%$11#%3>'##&$,#$$'+
-@1831_576_2014/1
-CCGTGACACACAATGCCGGCCCCAGCCTAGCAAT
-+
-@@9,B29-5>'?,+?79+/A';'2@'5&/9,6&1
-@1831_576_2028/1
-ACTCGCCGCATCCCCGAGTGACGCTCGAGACCAA
-+
-<>9>5'2(&707.8#&&39,0%7/#(#,*%&5*+
-@1831_577_40/1
-CCCCGCGTTACGAACGAGAGAAATCTCTTATAAT
-+
-2/4('.')(<*?#$)%&<,/39<(.2,+<=@611
-@1831_577_119/1
-TCCCACAAGCCATTGACATGCTCGCTCTAAACAG
-+
->?C11)-1/)#;#/,850*+.+$$5550+%-.40
-@1831_577_133/1
-TGCTTGTACGGTCTAACGGGGTATGGGTTTCTGG
-+
-4@>>?=1?:+>@07@@><>@*<+1@15)96'2$)
-@1831_577_255/1
-ATTGAGGCCAAGATAATTGAGGAGAGAGAAGGTG
-+
-<=87@>69%**#&#-+$.#&&#+$-+%&%.,%5#
-@1831_577_281/1
-TATGTACGTCGCGTACACTCCGGGGCCCGCAAAA
-+
--:B;8@=;>7@>4?=?+659?;5<7?;9@8(>:?
-@1831_577_288/1
-CATCCGAGGCTATCAAGGCGTAAGCACTGACCTA
-+
-;/79??&=B::298*6.7/+4&21,7,6?.7#'6
-@1831_577_322/1
-GAATGCTGGAGTACATTATGACAAACTATCGGAG
-+
-=;>4506;255464-<#7+194&2<?65968)7/
-@1831_577_362/1
-CGATTAGTTACCACTCGTATTCGCACGCCCAGGA
-+
-2B?:@?@<?958=,3:,90:&'-99,6<5.($+6
-@1831_577_382/1
-GTCGCGTATTCCCCGATGCTATGTAGACTTGCAA
-+
-2957/:1))=76(*24;,3+:<.&.&-=1=2/5*
-@1831_577_464/1
-TAGAGGCACCCTAACTCAGGGCTTTCTCGATTAG
-+
-=<7/<826)>#.'&4204+5#/041.7*91&756
-@1831_577_488/1
-TGAATAGTTATGGCCAGAATGTCTGCACCGATAC
-+
-48.,*>6566<?8=<=<2>6;94>;=9>@8924@
-@1831_577_511/1
-GGTGCTTATCAGTTCTTTCTCGGGACTTGTATTT
-+
-7/+&$:<7%6,$$%'%/+)#$7((&*3>16'0/+
-@1831_577_545/1
-ACCGCTCTTTGGGTATGGGGCAATCTGGCATGTT
-+
-><<9?<>?A<481@<@8==@76/61<95.5988-
-@1831_577_559/1
-GTGCCACTATGTTCGACAGACCCTAAGGCGGAAG
-+
-<@;??@>@?/2<.@1=>12=61/;=?.&2+92)'
-@1831_577_562/1
-GTTCCACTACGTTCCACGCAAAGGAATCCGAATC
-+
-((&*&0%)1%)#($2-,***%/-,,))&,-.1'*
-@1831_577_637/1
-GCCTTCGCGGGAGCATATCAGTCGATACATCCCA
-+
--,4#>:-6+:8,&(5;3=0>7=68&1/9&'?;4,
-@1831_577_641/1
-TATCTACCACCGCGGTGGCGCGAGAATGCTCCCT
-+
-47;/':A;;5?:72,(=),#*?+.#&7$8#%7/'
-@1831_577_692/1
-CCGGTGAGAATTACATCGCGAGTACGCCCAAGGA
-+
-B,@?@B(@A?@+@@>@+?=>@'=<@<=<9=?75<
+@081017-and-081020:1:1:1715:1759/2
+ACGCTCCTTTAAAATATC
++/2
+IIIII$%*$G$A31I&&B
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_wrapper_in3.fastq
--- a/test-data/bwa_wrapper_in3.fastq	Fri Jan 22 08:47:05 2010 -0500
+++ b/test-data/bwa_wrapper_in3.fastq	Fri Jan 22 10:49:38 2010 -0500
@@ -1,192 +1,4 @@
-@1378_11_329/2
-GTTCGTGGCCGGTGGGTGTTTGGG
-+
-###$$#$#$&#####$'$#$###$
-@1378_17_1788/2
-TGGGTGGATGTGTTGTCGTTCATG
-+
-#$#$###$#$#######$#$####
-@1378_25_2035/2
-GTGCGTCGGGGAGGGTGCTGTCGG
-+
-######%#$%#$$###($###&&%
-@1378_28_770/2
-GGTTGGGAGTTGGCGCGCGTGGTT
-+
-###$##%%$####%#%$#%%#($$
-@1378_33_1945/2
-GGGGGGGGGGGGGGGGGGGGGGGG
-+
-.6;?;55697>8779457986264
-@1378_34_789/2
-GGGCTTGCGTTAGTGAGAGGTTGT
-+
-###%$%$%%###$####$###$#&
-@1378_35_263/2
-GGCGGGGGGGGGGGGGGGGGGGGG
-+
-$%%&,)3/)%$-6'$&5&#$''5.
-@1378_43_186/2
-GCTAGGGTTTGGGTTTGCGGTGGG
-+
-$%#$########%##%#$###'#'
-@1378_51_1671/2
-GGTGTTGTTCGGATGTAGCGTGGG
-+
-##%$$####$########$##0##
-@1378_56_324/2
-GCTGGGTGATCTAAGGAATGTAAT
-+
-#$#####$$$#$$$$##%###*(#
-@1378_56_773/2
-TCTGGTCGGTTTCGGGGAGTGGAA
-+
-##%%#&$###$#$##%$####%%$
-@1378_62_2027/2
-GTTGGCCTGGCCTGCCGTGCTGCG
-+
-*##),/%##$)#%##1$#'%.#&#
-@1378_62_2029/2
-GGCGGTGTGTGGTGCGGCTGTGCG
-+
-/$$$=(####%####)$$%$-&%#
-@1378_67_1795/2
-CGTGCCAACGACCGTCCTACGGAG
-+
-@@.?7@@@.@:@A<<>>=>70<@7
-@1378_68_466/2
-GTGTCATCTGAGGTAAAGCATTGT
-+
-/##$09#$#.=$#$76+$%1'###
-@1378_68_1692/2
-TGTTCGATTTAGGTCTTGCCTCGC
-+
-###%%$%%##%$#$##$###$$#$
-@1378_80_664/2
-TGTCTGCGTTGTATCTCTGGTGTA
-+
-%##%,%$$#&$$###$#$%##'%#
-@1378_85_1786/2
-CCCTAGGAGCGTATACCGGACGAG
-+
-,'&/%/@,&1,&'/)&,6&&1)((
-@1378_86_1011/2
-AGGCGATGGGATATTATTTTACTT
-+
-:$###)%##$9$###1$$#$2###
-@1378_86_1789/2
-GGCCAGGTACTAATAAATTCAACA
-+
-1.51/&%#'$,*?%#6&0$$5,20
-@1378_91_1596/2
-GCTTTTTCATTCGGTGCCTTTGGA
-+
-'>%/3%=()8'#.%?50$&5>%)%
-@1378_94_1595/2
-GCGGGTTAACCCAGTACCTCTGGC
-+
-,8@6'>8<76>@@(->9)7'*941
-@1378_95_1039/2
-GTTCTGTGCCAGGTGAGGTACGGA
-+
-&##,./#$&)6##+,'#$$0(##$
-@1378_95_1767/2
-CTAATTGACCGGGCAAGCTATTAA
-+
-',,2'(10/>:=/7).3&%6&)&6
-@1378_96_1037/2
-CTGCTGGGCCATTTGACTTACTCA
-+
-'$#+#(##-%5##+*&###-.$$$
-@1378_96_1764/2
-TCTTTGTAACCCACTTAGTATTTC
-+
-4='28>.@4881B807:822>%)1
-@1378_98_1574/2
-AGGCGAGTGTGGGGGTTGTTTGAG
-+
-+%%$#)##%##$####%###$%$#
-@1378_107_1647/2
-GGTCTGGTTCTATGTTGGTCGACT
-+
-###'$$#$$$(#%###(#$##$%#
-@1378_111_829/2
-GGTCTTCTATGGTGCTAAATTAGT
-+
-$##'&###$##)#%($#$%#$'%#
-@1378_111_1900/2
-GCACGCCTTTGGGCTAAGCCGTAA
-+
-)$)'#%$########$'#&%$#(#
-@1378_112_1483/2
-TGGAGTGGTGTGTTTGCTGAGCCA
-+
-#$#)#############$#%#%'%
-@1378_125_1287/2
-TGACGTGGGTTGTCCCGTGAGATT
-+
-##$%%#$###$##$$#&%##$(%%
-@1378_126_468/2
-AAAAAACGGGCCGGGCGGACTAGG
-+
-@@B@@@>@2>1+?:92)>@8&&<+
-@1378_127_664/2
-TCGCTTTGCCTATGTTTGTTCGGA
-+
-#%$%#&##$%#%%###$$###)-'
-@1378_129_463/2
-AAAAAAAAAAAAAAAAAAAAAAAA
-+
-,)&20%8'(&35-***1-2&+510
-@1378_129_875/2
-GACCTTTACGTATTGGGGGTTGGC
-+
-###)###+###$##$#&%##$,#$
-@1378_140_1251/2
-TTTCCTTCGTGTGCGTGCGGAGTG
-+
-#%#%$##$$$######.$$$%#%(
-@1378_141_809/2
-TCTCGTGGTTTCTTTTTTATGTGT
-+
-##%)##$$#####%$#$#%%#'##
-@1378_144_983/2
-GTTCGTTCGTGGTGTACGAGGGTG
-+
-#(#%#####($#%##$$#%##%#)
-@1378_153_270/2
-GGCCGTGTGCGGGTGTAGATTGGA
-+
-%$##($######&##$&$$$$%##
-@1378_155_1689/2
-CGCGTTCGGACAAAGCTAGCACCT
-+
-@4@@=6=@@<4:@@681@@@.24.
-@1378_157_1580/2
-GGGATTGAAGGGATGTATGCTAGG
-+
-#%$&%#$$'%$%#$##*#%$$$$#
-@1378_161_317/2
-AATCCATACCCACAAAAGCAGGCC
-+
-.&%','(@''?7//+&)+2.+)0)
-@1378_177_735/2
-CGAGCCCTAAACCATGAGATCGGA
-+
-@@B>@AC9@A<B8@=9>7@5)>,0
-@1378_181_1684/2
-TTTCTGTTGTGGTTTTGTTGGGGT
-+
-$##'$%'##%##$%$#$$####$*
-@1378_187_1407/2
-TTGGGTGAAATCTTGTCGAGTGGA
-+
-####&##$$###$#####%##%%)
-@1378_203_721/2
-CCTTTACGATCATAAACCATGACC
-+
-9<&./1&@;12')?<1',?/)&/.
-@1378_206_2039/2
-CCCCCCCCCCCCCCCCCCCCCCCC
-+
-?=>>?=:;<>>4::<=56199(05
+@081017-and-081020:1:1:1715:1759/1
+GGACTCAGATAGTAATCC
++/1
+II#IIIIIII$5+.(9II
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_wrapper_in4.fastq
--- a/test-data/bwa_wrapper_in4.fastq	Fri Jan 22 08:47:05 2010 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,192 +0,0 @@
-@1378_11_329/1
-AGACCGGGCGGGGTGGCGTTCGGT
-+
-%##+'#######%###$#$##$(#
-@1378_17_1788/1
-TGCCGTGTCTTGCTAACGCCGATT
-+
-#'#$$#$###%%##$$$$######
-@1378_25_2035/1
-CTGCGTGTTGGTGTCTACTGGGGT
-+
-#%#'##$#$##&%#%$$$%#%#'#
-@1378_28_770/1
-CTGCTATGCCGGCCGCCTGCCCCT
-+
-%##(#$$#%$#$%###$%%$##$#
-@1378_33_1945/1
-GGGGGGGGGGGGGGGGGGGGGGGG
-+
-+9;64287788752796/576352
-@1378_34_789/1
-ATGGTGGCTGACGCGTTTGACTGT
-+
-#$##%#$##$&$#%##$##$###$
-@1378_35_263/1
-GGGCGGGGGGCGGCGGGGGGGGGG
-+
-),,#%'$)'-(%&%'%',%%&&(&
-@1378_43_186/1
-ATACTAGTTGGGACGCGTTGTGCT
-+
-#$(4%$########$#$###$$$#
-@1378_51_1671/1
-TGGGTAGGTGCGGCTCTTGCGGTC
-+
-##$#$%###%%#%#$##$$#####
-@1378_56_324/1
-AGGCTTGGATTGTTGCGCTGACCT
-+
-/+#**###%%##%#####$$$#$#
-@1378_56_773/1
-TGTCGTGAGGTCACTTATCCCCAT
-+
-&%#%##%%#####&#$%##$%##$
-@1378_62_2027/1
-CTTCCACGATCTGCTCGCTGTGGT
-+
-(#&&$##$$#$%#%$$$#$###'#
-@1378_62_2029/1
-TCTGGGCTGTCTTCGGGTCGGTGT
-+
-$%$$####$##$$#)##%%#$###
-@1378_67_1795/1
-TAGTGGGCTAGTCCGGGATCTACC
-+
-B@C2@@?;-@@1>'A@@91@.@1'
-@1378_68_466/1
-GTGATCGTCGGTGCCAGTCCCTGT
-+
-#(%)+##$#$#%#+$%##$#####
-@1378_68_1692/1
-GGTCTTCTGGGCACGGGCCAAGTT
-+
-###)%'&%##$###%#######$#
-@1378_80_664/1
-CTGCTTTGATCCCCGGTGGAGCAC
-+
-7#%###$$6#######$##$$$##
-@1378_85_1786/1
-ATACTATGTCGATCTGTAAAAAAA
-+
-)&.)#3%@$&%-,2#&+.-%0&./
-@1378_86_1011/1
-CTACGTTATTGCTCTGTTTGTCCT
-+
-######$%##$$$%###%#$####
-@1378_86_1789/1
-CGAATATCCCCTGGTTTAGAAGTA
-+
-61?1;@/>@<=/(.7'(<5@=%$=
-@1378_91_1596/1
-TTAGCGGTTGACTATCTGCTGACA
-+
-*&+'#9'(%*'#//,&<),/)'*#
-@1378_94_1595/1
-CGTGCGACAGCCCATGTTTTCAGA
-+
--=..5,3826&*+.+#+#%%6;%#
-@1378_95_1039/1
-CGGCGTCCATCTTCGCCTTGAGAT
-+
-$##.#$##$$#%$#$%%$###$)$
-@1378_95_1767/1
-ACACGCACCATCTGGCGGCTAACC
-+
-86<65<4<C27/$5+#;-$+#2%$
-@1378_96_1037/1
-ATCCCCCAAGATGCCTGTTGATTG
-+
-$#$'##$$$#%$$#%###+##$#$
-@1378_96_1764/1
-TACACCGGAACCTTGCACTAAAGC
-+
-6-9'<#+81?+*<8-=69&6;*3)
-@1378_98_1574/1
-GTTCTGCCGGTGTCTGTGGCGGGC
-+
-$$#+&$$####%$$$###$%#%%#
-@1378_107_1647/1
-AGGCCTACTACGCGTCATTGATAG
-+
-&#$$#$(.#%#$$####&$%##($
-@1378_111_829/1
-TGCGGCACTTGCTTCTTCGTATTT
-+
-%#%##%#$%#$#%###$$##&#$$
-@1378_111_1900/1
-TCCCCTCGCTCGGCTCTGTGCTGT
-+
-$&%*$#(#)##$#'##%(##$#$%
-@1378_112_1483/1
-TGTCCAGCTATGCGGCTTCCTCCT
-+
-%#$+#%#&#$#####%####%$##
-@1378_125_1287/1
-TGTCTCTGGGGGGCCTGGTTAGGT
-+
-$##13$'%#$###$$###$$$#&#
-@1378_126_468/1
-TCTCCTGATTAGACATATCTCCGT
-+
-7>@318?=,=8@49579?..7,7)
-@1378_127_664/1
-AGAGGTTGGTGTCTTGTCGCAGCT
-+
-##'#$######$$%######$$$#
-@1378_129_463/1
-CCTGTGGGCCAAGCCCAATGAAAG
-+
-8),,<6(--)<()5&.&/8+;.2+
-@1378_129_875/1
-TTTCTATGGCTTACGCTGTCTGCC
-+
-#$($##%####%$#$#####$###
-@1378_140_1251/1
-ATCCTAGCGCGGTGTCTTGGGGAC
-+
-#$%1#$$$##$##$#$#$##$%$$
-@1378_141_809/1
-TGTCCTCCAGTGTCTGTTGGGTGT
-+
-%&,-##$$#(%###$#$$'###'#
-@1378_144_983/1
-AGCGCCCGGTTGGTGCGGCTCGTC
-+
--$(&%*$#*#))#$$$#%%$#$##
-@1378_153_270/1
-AGTCCTTGTCCCCTGGGTTTTCCC
-+
-+''$#&%$%#$##&$$($#&#$$#
-@1378_155_1689/1
-TTGGGAGGGAGAGAGACTAGACCG
-+
-?4@@4<<??<?-@4@=4<5<?:/>
-@1378_157_1580/1
-TGGGCCTCGGTGCCCTTGGTCTGT
-+
-#%)$##'#$$$&#####%#$#$##
-@1378_161_317/1
-TTGGCCGGCAACCCCGGTACCTAA
-+
-7<,<'@)@>.)2@/')'&(?/-<(
-@1378_177_735/1
-AGTACGCCATGTATTTGCGACCAG
-+
-=?@?C<88@=>:7>@55/.,416,
-@1378_181_1684/1
-CGACTCCCGCATTCACGGTCAAGT
-+
-&*#,##$#&$*$$#$#$$$#%$##
-@1378_187_1407/1
-TGGCGTCCACTCGTGGGTCTATCG
-+
-$#$'%#$%$%&$%#####$#$#%#
-@1378_203_721/1
-CCTAAATAACCCAGGGTAAAAGAT
-+
-9<1+2+1@=259@+;2.71&@+2&
-@1378_206_2039/1
-CCCCCCCCCCCCCCCCCCCCCCCC
-+
-9@?8>;>>><<994;=895895-8
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_wrapper_in5.fastq
--- a/test-data/bwa_wrapper_in5.fastq	Fri Jan 22 08:47:05 2010 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-@081017-and-081020:1:1:1715:1759/2
-ACGCTCCTTTAAAATATC
-+/2
-IIIII$%*$G$A31I&&B
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_wrapper_in6.fastq
--- a/test-data/bwa_wrapper_in6.fastq	Fri Jan 22 08:47:05 2010 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-@081017-and-081020:1:1:1715:1759/1
-GGACTCAGATAGTAATCC
-+/1
-II#IIIIIII$5+.(9II
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_wrapper_out0.sam
--- a/test-data/bwa_wrapper_out0.sam	Fri Jan 22 08:47:05 2010 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,1 +0,0 @@
-081017-and-081020:1:1:1715:1759	16	PHIX174	322	25	36M	*	0	0	GATATTTTAAAGGAGCGTGGATTACTATCTGAGTCC	B&&I13A$G$*%$IIIIIII9(.+5$IIIIIII#II	XT:A:U	NM:i:2	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:2C8A24
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_wrapper_out0b.sam
--- a/test-data/bwa_wrapper_out0b.sam	Fri Jan 22 08:47:05 2010 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,144 +0,0 @@
-1831_573_1004	0	phiX	278	25	33M1S	*	0	0	TTAGATATGAGTCACATTTTGTTCATGGTAGAGG	]]>!4[WPFW]\ZSV]\YNRZOWWTTU]MJQEM	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_573_1050	4	*	0	0	*	*	0	0	TTTATGGGTATGGCCGCTCACAGGCCAGCGGCCT	;@@17?@=>7??@A8?==@4A?A4)&+.'&+'1,
-1831_573_1067	4	*	0	0	*	*	0	0	AAGTATGAGTCATTTACCGGGATGCGAAGAAAAG	++#%(',%/$,+&1#&),)&+'*'*%#$&#%('$
-1831_573_1219	16	phiX	2202	37	1S33M	*	0	0	TACGTCACCTTATCAGTCCAATTTAAATTACACT		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_573_1242	0	phiX	648	37	33M1S	*	0	0	CATCCCGTCAACATTCAAACGGCCTGTCTCATCC	]]]]XQ]]]]]]]][]]]VIMOW]SW]]]T*1]	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_573_1333	4	*	0	0	*	*	0	0	AGAATCGTTACCACACACTGCGTCTGGGTATCCG	='@#%3=.>)/34*117,,/6-4+.9742456<)
-1831_573_1362	4	*	0	0	*	*	0	0	CGATCTCAACCAGGTCCGCGCCCACCCCTGCCTC	B@@?@@?@C@BA?@>@<@8A@?@'.8'?17:,+?
-1831_573_1448	16	phiX	2563	25	1S33M	*	0	0	CGAAGTAACGTAAGTCTACCTATGTAGACAGTTG		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_573_1490	0	phiX	1767	25	33M1S	*	0	0	CGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACC	]]]TU]]]=;]]]R9=BQQDF>QZQ1,LBIGEN	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_573_1523	4	*	0	0	*	*	0	0	ATGGAACGGAACGGGTGAGGAGGGGAACGTAGGG	,//*,#8''.6''6'2&27/80)%�'%#*,2'
-1831_573_1578	4	*	0	0	*	*	0	0	CGAGTAGCAAACAAGACGCCAATCCAGGCGACCC	?=@<@C@?@@??=>@;7<<8<694)3511(+1<.
-1831_573_1647	16	phiX	1118	37	1S33M	*	0	0	ACTGAGGAAGCTCTACCTGCGGCAACCGCGAGAG		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_573_1684	16	phiX	3696	37	1S33M	*	0	0	ATCACGACTCCAACTGAATCAAGTAGTCGTTTGC		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_573_1769	4	*	0	0	*	*	0	0	TGGACGTATAGTGGCGATGAGCATGTAGGTTCTC	54749&&767%/7;3$-7;3#,3//#,45/#&06
-1831_573_1853	4	*	0	0	*	*	0	0	CAAAACGCCCGGGGCCTCACATGCGCGGCAGTTC	4./B@@72B+/4?@?7?+@9/+99.')2<2&)2&
-1831_573_1943	4	*	0	0	*	*	0	0	ATAACGTATGGCAGTGAACGGGCGGAACCTGCCC	>/*1,),@-)'0*>5'$/?6@/.&?8/(')A43,
-1831_573_1977	4	*	0	0	*	*	0	0	GGCGTAGGGCTCATTGTGCAAGTATCCGACCTCC	@?6@8@@9A@=4633A7?9?<3:+7>'@%@?%32
-1831_574_109	0	phiX	3729	37	33M1S	*	0	0	CAGAATCAGCGGTATGGCTCTTCTCATATTGGCT	VTO/2URQ]]]TZWU[UTQP\]XY]VS[WLN]]	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_574_148	16	phiX	2369	37	1S33M	*	0	0	GATCCAAAAGACGAATCCTCAAATTAGTACAAAG		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_574_185	4	*	0	0	*	*	0	0	CCGTTTTGCCTAGTAATGCTCGGCGCAGCGTCGC	<4;%%@7>#*>97%6;+8$#<07%1372$%<54#
-1831_574_243	0	phiX	2129	37	33M1S	*	0	0	TCTGGTGATTTGCAAGAACGCGTACTTATTCGCA	]]]W]]]]RQ]YRBI]]Y0<]]]CI]]]FM]]Y	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_574_257	4	*	0	0	*	*	0	0	ATACCTTCCAAAGCAATAGAATAAAAAACAGTAC	>>B>)@?>B@B?@1%*%,#+00.'(+&5&%#$3&
-1831_574_293	4	*	0	0	*	*	0	0	TGCTGCAAATAAACATACAGCCTTCTAATGACTA	')7'.*%#&$'/.$##$.$&*)+*$#8%&%#&&%
-1831_574_389	4	*	0	0	*	*	0	0	CATGGCTATGCACCGGTTTGTAGCGTACTCGAGA	)$>/>8):2@:213;;.1)@3%64%+)<7)+$92
-1831_574_575	16	phiX	4006	37	1S33M	*	0	0	CTTACAGTGCGACTAATAAAACTGAAACTCGCAT		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_574_592	16	phiX	2950	37	1S33M	*	0	0	TCGCCATAACGAAGACGAGAACGACCACCGCGGT		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_574_617	4	*	0	0	*	*	0	0	AAGCATCGGCGGGAGCGCAAGCTGGGAAGGTGCC	>@?;>?=@==@>@=5?@+@:@40@><:0)')64-
-1831_574_725	4	*	0	0	*	*	0	0	GACAAGATGGCTATTATTTACAATCCGATCTGCA	'>?52+5=;4$6;<8.1<47*9+?7(+5;-).)4
-1831_574_734	16	phiX	5263	25	1S33M	*	0	0	CCTCTCTACTCTAACTCCGACCCTTTTCAATGAC		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_574_824	16	phiX	3997	37	1S33M	*	0	0	ATGGGAAGACTTACAGTGCGACTAATAAAACTGA		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_574_959	4	*	0	0	*	*	0	0	CGCGCTAGGACTCGGCCCCAAGAGACGTTCCGCC	A=;+?@9;/<@;<8#&&/*%(%.0$0$2)+1$-1
-1831_574_1062	4	*	0	0	*	*	0	0	ACCGGTAATATAAGGCAACATGATTACGGCCACG	@821<//:136/8<1/5.427.;>288/0<1$)/
-1831_574_1092	4	*	0	0	*	*	0	0	GACTGGCGAAATCATCGCGGAAAAACCCCTATCA	8?.,98)03%#,,,(,++$'69'#9'7#';6.%2
-1831_574_1103	4	*	0	0	*	*	0	0	ATCTCCTGATTAGACATATCTCCGTAGCTCACGC	??>?@=>@@A<>?=@==<:?<;58'&&):+35'1
-1831_574_1116	4	*	0	0	*	*	0	0	CACCTCACGTGAGTATAGCAGCCCGAGCGTCACC	@++,)/)?./)%<)2>.==:8?&;44&/&,)/*4
-1831_574_1194	0	phiX	1136	37	33M1S	*	0	0	GCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTG	\]PT]]]]]]]ZZ]]]\Y]]]]\]]]V\]UMDK	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_574_1204	16	phiX	1445	25	1S33M	*	0	0	TGGATTACTCGAATTAGTTCTACTACGAGCAATA		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_574_1306	4	*	0	0	*	*	0	0	ATTGCTTAGATCCAGTGGCGCTCAATACAACGGA	2.7&%''.$&#'%##$#'#%')')$'$%$,)'.1
-1831_574_1387	4	*	0	0	*	*	0	0	GTACTTCTCAATGCTGCACTACTATGTACGCCCC	?A??:@?@@9?@@?9C;:>&).,,);&'<&7(/'
-1831_574_1431	4	*	0	0	*	*	0	0	GACCAGTTTCAGGGCTAACCGTCCCTACTCGACC	7?>9BA897;+8*=6#6.+5&-#26$0.,5&'$1
-1831_574_1560	4	*	0	0	*	*	0	0	GGCGTCTTAGGATTGAAGAGGGCCTCCCACCCCC	))&65<4=>99@:597(1&;+&(%&4#,#&&&*$
-1831_574_1591	16	phiX	5118	37	1S33M	*	0	0	CTTCGACAAGTCTTAGTCTTACTCGGCGTTGAAG		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_574_1624	16	phiX	4058	37	1S33M	*	0	0	CATAACTCCGAACACCGTAAAGATGAGAAAGAGT		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_574_1826	4	*	0	0	*	*	0	0	TACGTCGCGACCGAGCGTTATATAGTCTGACCCC	@<<,))459<?.+57'-'&6?1)(;1;0&%4,#$
-1831_574_1903	0	phiX	5209	37	33M1S	*	0	0	AGCTGGGTTACGACGCGACGCCGTTCAACCAGAC	WT]]]][]]]][]]]]]]]]]]][X]QYYTYZ-	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_574_1961	0	phiX	3555	25	33M1S	*	0	0	CGCGTTGCGTCTATTATGGAAAACACCAATCTTA	TFPMV]OCBP]H<OS]<1CN]]M=K]52KO]WT	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_575_54	16	phiX	3587	37	1S33M	*	0	0	TAAGGTTCGTTGTCGTCCAAAGGCTCTAATACGC		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_575_80	4	*	0	0	*	*	0	0	TCTTTGGGTTTGGGGCAATTTGGTATGTTCGTCT	?5><@?/=5%(&.5)+#/0'/'>#$/'37#()6&
-1831_575_192	4	*	0	0	*	*	0	0	AACTACGCCCCTTAATTACACAGCGCGTTAGACC	:8<,9(.=/)#%8$,4'<,:)3/.'.5<,>-;7'
-1831_575_197	16	phiX	4861	37	1S33M	*	0	0	CCGAACGTTTTATGCACCGGAATACCAATGTCAT		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_575_223	4	*	0	0	*	*	0	0	ACGCACAAAGGAGCTCGGCGCATAGCAACGCAGA	?>?8?@:?;>+$'%&,+#$.--#%$1'&#-7$&'
-1831_575_420	4	*	0	0	*	*	0	0	CCCACATGGAAAACACTCACCGCCGAACAGAGCG	2?.>?(-''2+..@),$%1@;')1)?+)7.')..
-1831_575_434	4	*	0	0	*	*	0	0	ATCGCTGCGAGGTCACCCTGGTTACGCCCCTTCC	@@><@B@>=@@?>><@?;)@?;6.?=4,'';/3)
-1831_575_444	16	phiX	5098	37	1S33M	*	0	0	TTCGACAGCGATGAAGGGTTCTTCGACAAGTCTT		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_575_459	4	*	0	0	*	*	0	0	CTTATCAGCACACGGTTTACCAGTCCGACTCCAA	@@C@?A@@A@??A@@'6@@B'=;C@'4<=9,@1.
-1831_575_506	4	*	0	0	*	*	0	0	CGCAGAACCCGCACGCTTGTGCTCACCACTGTAC	?)2*5@3+.7=?A:8@,/&):@37/<89'+4*)*
-1831_575_569	0	phiX	5043	25	33M1S	*	0	0	GACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAAT	IOBU[TMHTYG4M]7$?Q]]]57]SKXQC;:FE	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_575_622	0	phiX	2485	37	33M1S	*	0	0	GTTTTACAGACACCTAAAGCTACATCGTCAACGC	]]]]]]]]]]]]]]]X[YVYINYLTLJWHO[$!	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_575_644	4	*	0	0	*	*	0	0	CTTGAATGGCGATCTCGTCGAGGAAATACCACTA	<8>.>&,+)8.10':5(/-62&*.=/%(.<&&18
-1831_575_663	16	phiX	1554	25	1S33M	*	0	0	TGCTGAAGATGGTGTAGATAACTGTAATACCCAG		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_575_681	4	*	0	0	*	*	0	0	TCTCCTGATTAGACATATCACTGTTGAACACAGC	72?.)25;96-14'*.03'#4#++$)/8+%/((&
-1831_575_711	4	*	0	0	*	*	0	0	TATGTTCGTCCACGTCAGACGCGCAAAGTTGCGC	%+:2(#'1+.)&*45-#,<A-%4;>+))<;##*&
-1831_575_730	4	*	0	0	*	*	0	0	CACACAGGAACCATAGCGTATGTTATTCACCCCC	%8<%-')5,*1&=#)(1*1)->7$.,4'4'&'*&
-1831_575_904	4	*	0	0	*	*	0	0	ACCCGCTTAAAGACGTGAATTTTGCCTCCGCGCC	<><.689@@7@<54:4=@>69=:+6-=42;8<:#
-1831_575_938	16	phiX	1133	37	1S33M	*	0	0	TCTGCGGCAACCGCGAGAGGCAGAAAGAGGTAAC		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_575_970	16	phiX	232	37	1S33M	*	0	0	GCTCCTCTTCACCGAATTATACGAACCGTGCAAG		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_575_991	4	*	0	0	*	*	0	0	TTCGGCGATCCCCCCCACGGCGCGATGCCGCGCA	>>;7???/4<:::,#&*%'$--5-#(7)&&,-)%
-1831_575_1138	0	phiX	1913	37	33M1S	*	0	0	GCTAAAGGTGCTTTGACTTATACCGATATTGCTC	VT7-SURJS]X]TT]Z]UY]]]]]]X[UN[NMT	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_575_1157	16	phiX	3736	25	1S33M	*	0	0	GTCGCCATACCGAGAAGAGTATAACCGCGATGAC		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_575_1180	0	phiX	4169	37	33M1S	*	0	0	GGGCGTTGAGTTCGATAATGGTGATATGTATGTA	]]\]OJROX]]UUYSX\[Y]]]]VZ]\VRWLT]	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_575_1283	4	*	0	0	*	*	0	0	GGTGGAATACTAAGGACTAATGTGCTGTCTCTTT	C@A54><?A78@<?2>:#>=?@2>80:'?69.'7
-1831_575_1302	16	phiX	5202	37	1S33M	*	0	0	GGAATGGTTCGACCCAATGCTGCGCTGCGGCAAG		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_575_1310	16	phiX	1612	37	1S33M	*	0	0	AATGACTGGTTCTTGCACTAATGAAGTACGTCGC		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_575_1321	0	phiX	2664	37	33M1S	*	0	0	TTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACG	]]]]]]]]]]]]]]]]]]]\ND]]]7/]]]WPZ	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_575_1373	16	phiX	4221	37	1S33M	*	0	0	TAGACTGCAAGCACTACTCAAACATAGACAATGA		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_575_1419	4	*	0	0	*	*	0	0	TGGGGAATATAACAGCGTAGCGTTGAACACTAGA	//3->&-.->%11/@&/&7:<,-1=,+2<6'%&<
-1831_575_1436	0	phiX	3460	37	33M1S	*	0	0	CTGGCATTCAGTCGGCGACTTCACGCCAGAATAC	[]]WULFXOGY]]\PY]]IGZ]]M@V]XAAMR[	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_575_1442	0	phiX	3317	37	33M1S	*	0	0	TGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCG	\V]]]]RE\]LEQ]]]X]]]]TZ]]QUPW]LIX	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_575_1454	4	*	0	0	*	*	0	0	CCTCCTAACCACGAGCCGAGGGGTCTCTGCCCCT	4=?8=6589=0:A=:?>6<;@/,4+-6+/'.,(,
-1831_575_1500	16	phiX	4269	37	1S33M	*	0	0	GCTTAACCGTGTTACGATGTTACACGAGGGGGTT		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_575_1535	16	phiX	1225	37	1S33M	*	0	0	GAGTGCAAATACCACTTGTCACCTAATTCAAGTA		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_575_1724	4	*	0	0	*	*	0	0	TCGTAAGTGTTAAGGAGCTGTGTACAAAACAACA	<B.+@),2*.%)))4%2@;7#%(%+$8))85%&5
-1831_575_1829	4	*	0	0	*	*	0	0	CATTTGCTGACCCTGCGTAGTTTAGTCTCACAGC	2(*'%.3$+7)@&%$'3*+*#/#/*+0.=&#)+0
-1831_575_1898	4	*	0	0	*	*	0	0	CTTACCATATCATCTCAACCCATAACAGCACTTA	B>@@&1/))'40)%#8/.%#8$((#;4'$'63,,
-1831_575_1964	4	*	0	0	*	*	0	0	GACAGACCATGAGGCTGAAGACTACTAAGTGCGT	>39)@2<2/@+9?2=&)>>@*62=5&2<42.'?+
-1831_576_32	16	phiX	988	25	1S33M	*	0	0	TAACTCCTATTTAATACAGATTATAAGTTTGACC		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_576_74	4	*	0	0	*	*	0	0	ACATTCTGCAGTGGGACAGAGCGGTACGCCGCAA	=@@?@>(??<B5?@@@9<@><+><;@';>6961?
-1831_576_86	16	phiX	2981	37	1S33M	*	0	0	TGTACAGATTTAACAAACCTCCGCCAGTTTTTCG		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_576_89	4	*	0	0	*	*	0	0	GCTGTTTGATTTGAGAAGAGGAATTAAGCGCCGA	)69+,'.4=-,>/>(*$#)3030*'(,%)2##$,
-1831_576_266	16	phiX	280	37	1S33M	*	0	0	ATCTATACTCAGTGTAAAACAAGTACCATCTCTA		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_576_327	16	phiX	4517	25	1S33M	*	0	0	TATGATAAGTCGCAAACTACTTACGTTACGCTGT		XT:A:U	CM:i:1	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:1G31
-1831_576_331	4	*	0	0	*	*	0	0	GACGCTTTACTCCGGTAGTACCGTGCCGTTTATA	-2)+(*.*1/;5%.-9&#/1'+($*$##()%/$.
-1831_576_387	4	*	0	0	*	*	0	0	ACACGCCATGATCCGATAAGAAGGGAACGTAAGG	8).$5#1#*%.$##.*#$%##-%,+,1#&%.%))
-1831_576_406	4	*	0	0	*	*	0	0	AGGTCTTACAGCACGGGGCTGAGCGCATCTGACC	4<>%%14:*4656)&<251&2+3#&19,6&4>5(
-1831_576_449	4	*	0	0	*	*	0	0	CTCGAACCGCGGGGTCCAAAGACTGCTGCAAGGA	+'&'.,,$/+.)$$8&%#+?&,#)-&###7,+#*
-1831_576_519	16	phiX	1625	25	1S33M	*	0	0	GGCACTAATGAAGTACGTCGCAATGGCACTACAA		XT:A:U	CM:i:1	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:25A7
-1831_576_603	16	phiX	1576	37	1S33M	*	0	0	GGTAATACCCAGACGTTCGACGAATACGATTAAA		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_576_655	16	phiX	3292	37	1S33M	*	0	0	CAACGACGACGTAAAGGACTCGAATTACGAACCC		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_576_677	4	*	0	0	*	*	0	0	TTTACTCAGTTGATACATCACTGTAGCACATAGG	290&/*0#&'&,.2'#&*$&('#-%($*#%$)#%
-1831_576_718	4	*	0	0	*	*	0	0	CGTGCCTTTCAGGGTCTTTTCTGGTCTGGTCGCT	4###$0###%(#########,####%####$###
-1831_576_722	4	*	0	0	*	*	0	0	CGTATGATGGCGAGTCTTTATAATCCAATCTGAA	*,-,##.)*&(*1%*(%(-2#+)-#.&-#%%$')
-1831_576_754	4	*	0	0	*	*	0	0	AGGCGTCCTGCATCGACCGTTCTATCCGCTTAGA	4//#(.$)'',>($<,##%((,#5?#0*%1*
-1831_576_815	0	phiX	5186	37	33M1S	*	0	0	GGAGTGCTTAATCCAACTTACCAAGCTGGGTTAC	Z]]]]]]]]]]]]]]]]]]]UP[ZKIP]][ZUN	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_576_882	0	phiX	5053	37	33M1S	*	0	0	CTAAAGGTCTAGGAGCTAAAGAATGGAACAACTG	Q]]]]]W[]]]X]]]]][EAV]]ZUS\]]]VX]	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_576_898	0	phiX	518	37	33M1S	*	0	0	GATTGCTACTGACCGCTCTCGTGCTCGTCGCTGT	]]]Z]]]]]]]YW]]]]VV]]X]]]]]VO]]]T	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_576_923	0	phiX	1050	37	33M1S	*	0	0	ATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCG	MLOW]RMX[]]X]]]XV]]]UKU]]]W\\]\ST	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_576_930	4	*	0	0	*	*	0	0	CTGGCATGTACGTCCATGTCAGACGAGCAGAACT	#*0.2&.:((#'14'##-)#%$$2%#$/1&#%/#
-1831_576_1019	4	*	0	0	*	*	0	0	GATGCGCGCTGTCATGGCATCGAACCATCGGTCG	<$>$,1,&++&@,.)'+/+#9'69/6'2(+-'9-
-1831_576_1068	4	*	0	0	*	*	0	0	AAGAGTGACTCACTTACCGGGATGCGATGGAGCC	>><=4?;@7=??9?;9>5@9?:8@:=5';7;'#4
-1831_576_1131	16	phiX	4061	37	1S33M	*	0	0	TACTCCGAACACCGTAAAGATGAGAAAGAGTTAG		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_576_1168	4	*	0	0	*	*	0	0	CACTTAACTCCGCTGTCGGAAGCCTTACAAGACA	@CC6@@2?9=>7?;76<;467@;9,0%26'',4$
-1831_576_1207	4	*	0	0	*	*	0	0	CAACCTGACTAAACGGGGATACGCTGGCGCTACA	$>2,(&?4?(,@:<&,@>?$&:8A%%=0.%,597
-1831_576_1289	16	phiX	1899	37	1S33M	*	0	0	AAAGTCATGGAATTGCGATTTCCACGAAACTGAA		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_576_1329	4	*	0	0	*	*	0	0	CCAATAGCAGAGACCTAATAGGAAACGAAAGCAA	>&0,870/A@@/5.;=;:'&@3'&$$%,+#($&2
-1831_576_1367	0	phiX	1839	37	33M1S	*	0	0	AGCATGGCACTATGTTTACTCTTGCGCTTGTTCT	]]]]]]]]]]]]]]]]]]\]]]]]]]\YW]]XX	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_576_1416	0	phiX	4522	37	33M1S	*	0	0	TTCAGCGTTTGATGAATGCAATGCGACAGGCTCC	K]VEHHS]P>TQJML]]\UFU][L6K]\TMPZ]	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_576_1461	4	*	0	0	*	*	0	0	GAGGGGCGGCCCGGTTCAAGCAGGTAAGCAACAA	1&74#(#(&##$#,'###%#%%#*#&%%##%%%'
-1831_576_1605	0	phiX	5209	37	33M1S	*	0	0	AGCTGGGTTACGACGCGACGCCGTTCAACCAGAC	]]]]]XU]]]]]]]]]]]]]]X[]KHLWZUXW,	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_576_1664	4	*	0	0	*	*	0	0	CGCGCACAACTCGCCATGATACGACAAGACCCGA	@?>?@=A:@@>@='=<>=).>=9*8)(7#/++;)
-1831_576_1671	4	*	0	0	*	*	0	0	GTCTTTGTAAGCCTGGCCTGGTCAGGTCTGGTCT	@?@5>@@8&8?25#&)&5&&)15&&,&4%&,&6%
-1831_576_1729	16	phiX	5194	37	1S33M	*	0	0	TATTAGGTTGAATGGTTCGACCCAATGCTGCGCT		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_576_1880	4	*	0	0	*	*	0	0	TATGCGCTGTTGAGCTTACAACTCACTAGCGAAT	515/792,:,7/%/05,%$):+#8%2(1754))3
-1831_576_1982	16	phiX	5024	37	1S33M	*	0	0	TATTGTTTTTCAGTCTATACCTGGAACGACGATT		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_576_1987	4	*	0	0	*	*	0	0	AAGGTCTTCTGTCGGCGCTGGACTGAACACCTGA	##()(#&##)%)/-#%$11#%3>'##&$,#$$'+
-1831_576_2014	4	*	0	0	*	*	0	0	CCGTGACACACAATGCCGGCCCCAGCCTAGCAAT	@@9,B29-5>'?,+?79+/A';'2@'5&/9,6&1
-1831_576_2028	4	*	0	0	*	*	0	0	ACTCGCCGCATCCCCGAGTGACGCTCGAGACCAA	<>9>5'2(&707.8#&&39,0%7/#(#,*%&5*+
-1831_577_40	0	phiX	2772	25	33M1S	*	0	0	TGTGACTATTGACGTCCTTCCCCGTACGCCGGGT	JLE8>>9:MOR=!&74KQDKU]M?IG@P]]]PK	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_577_119	4	*	0	0	*	*	0	0	TCCCACAAGCCATTGACATGCTCGCTCTAAACAG	>?C11)-1/)#;#/,850*+.+$$5550+%-.40
-1831_577_133	16	phiX	1714	37	1S33M	*	0	0	CGTACGCGAGATTAGAGACCCGTAGACCGATACT		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_577_255	4	*	0	0	*	*	0	0	ATTGAGGCCAAGATAATTGAGGAGAGAGAAGGTG	<=87@>69%**#&#-+$.#&&#+$-+%&%.,%5#
-1831_577_281	16	phiX	4577	37	1S33M	*	0	0	TAAAACTGTGAGAGTGCAACCGACTGCTGGCTAA		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_577_288	0	phiX	3201	25	33M1S	*	0	0	GGCACTTCTGCCGTTTCTGATAAGTTGCTTGATA	SOY]]NL]]]UTZKIMNOCH/-LFLLK]VN5%F	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_577_322	16	phiX	458	37	1S33M	*	0	0	CAAGACGGCAAAACCTAAATTGGCTTCTACTAAA		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_577_362	0	phiX	2153	37	33M1S	*	0	0	CTTATTCGCCACCATGATTATGACCAGTGTTTCA	]]]]]]]]]WV]RHVONRSI6=O[NK[ZL?%(J	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_577_382	16	phiX	4686	37	1S33M	*	0	0	TCCAGCGTTCCGATTACTAAGTGTGCGGCTGACG		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_577_464	0	phiX	2126	25	33M1S	*	0	0	CCTTCTGGTGATTTGCAAGAACGCGTACTTATTG	]\OT]SQHP<,>6COKMHI3-HMNHNJLS@FUT	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_577_488	16	phiX	4948	37	1S33M	*	0	0	GCCGGACAACTACGATTTCCACTCGGCGAATTTC		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_577_511	4	*	0	0	*	*	0	0	GGTGCTTATCAGTTCTTTCTCGGGACTTGTATTT	7/+&$:<7%6,$$%'%/+)#$7((&*3>16'0/+
-1831_577_545	0	phiX	1711	37	33M1S	*	0	0	TGTCATGCGCTCTAATCTCTGGGCATCTGGCTAT	]]]]]]]]]YURZ]]]]]]]VNNPV]WLLWZYN	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_577_559	0	phiX	3840	25	33M1S	*	0	0	GCTGTTGCCGATACTTGGAACAATTTCTGGAAAG	]]]]]]]]WJWSWZW]XLX\P#-]]V=A(/TD9	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_577_562	4	*	0	0	*	*	0	0	GTTCCACTACGTTCCACGCAAAGGAATCCGAATC	((&*&0%)1%)#($2-,***%/-,,))&,-.1'*
-1831_577_637	0	phiX	4247	37	33M1S	*	0	0	TGTTACTGAGAAGTTAATGGATGAATTGGCACAA	BI2<]PLJN[M;7FYWYVW]]\WG@IQH6O]XI	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_577_641	4	*	0	0	*	*	0	0	TATCTACCACCGCGGTGGCGCGAGAATGCTCCCT	47;/':A;;5?:72,(=),#*?+.#&7$8#%7/'
-1831_577_692	0	phiX	3905	37	33M1S	*	0	0	GTCTAGGAAATAACCGTCAGGATTGACACCCTCA	WU]]]SQ]]]TT]]]TS]]]PM]]]]]]]]]UZ	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
diff -r ea652508497a -r 4cd66d01aaf0 test-data/bwa_wrapper_out1.sam
--- a/test-data/bwa_wrapper_out1.sam	Fri Jan 22 08:47:05 2010 -0500
+++ b/test-data/bwa_wrapper_out1.sam	Fri Jan 22 10:49:38 2010 -0500
@@ -1,144 +1,1 @@
-1831_573_1004	0	PHIX174	278	25	33M1S	*	0	0	TTAGATATGAGTCACATTTTGTTCATGGTAGAGG	]]>!4[WPFW]\ZSV]\YNRZOWWTTU]MJQEM	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_573_1050	4	*	0	0	*	*	0	0	TTTATGGGTATGGCCGCTCACAGGCCAGCGGCCT	;@@17?@=>7??@A8?==@4A?A4)&+.'&+'1,
-1831_573_1067	4	*	0	0	*	*	0	0	AAGTATGAGTCATTTACCGGGATGCGAAGAAAAG	++#%(',%/$,+&1#&),)&+'*'*%#$&#%('$
-1831_573_1219	16	PHIX174	2202	37	1S33M	*	0	0	TACGTCACCTTATCAGTCCAATTTAAATTACACT		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:0	XO:i:0	XG:i:0	MD:Z:33
-1831_573_1242	0	PHIX174	648	37	33M1S	*	0	0	CATCCCGTCAACATTCAAACGGCCTGTCTCATCC	]]]]XQ]]]]]]]][]]]VIMOW]SW]]]T*1]	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:1	XO:i:0	XG:i:0	MD:Z:33
-1831_573_1333	4	*	0	0	*	*	0	0	AGAATCGTTACCACACACTGCGTCTGGGTATCCG	='@#%3=.>)/34*117,,/6-4+.9742456<)
-1831_573_1362	4	*	0	0	*	*	0	0	CGATCTCAACCAGGTCCGCGCCCACCCCTGCCTC	B@@?@@?@C@BA?@>@<@8A@?@'.8'?17:,+?
-1831_573_1448	16	PHIX174	2563	25	1S33M	*	0	0	CGAAGTAACGTAAGTCTACCTATGTAGACAGTTG		XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_573_1490	0	PHIX174	1767	25	33M1S	*	0	0	CGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACC	]]]TU]]]=;]]]R9=BQQDF>QZQ1,LBIGEN	XT:A:U	CM:i:0	X0:i:1	X1:i:0	XM:i:2	XO:i:0	XG:i:0	MD:Z:33
-1831_573_1523	4	*	0	0	*	*	0	0	ATGGAACGGAACGGGTGAGGAGGGGAACGTAGGG	,//*,#8''.6''6'2&27/80)%�'%#*,2'

    

Greg Von Kuster

tags

participants (1)