Filter data and cut column bugs
Hi all, I filled the following bugs 2 weeks ago, with patches: https://bitbucket.org/galaxy/galaxy-central/issue/537/ Filter data on any column tool casts unused columns https://bitbucket.org/galaxy/galaxy-central/issue/536/ Filter data on any column tools shows nonsense % vs total on stdout https://bitbucket.org/galaxy/galaxy-central/issue/535/ Filter data on any column tool complains about hash comment lines https://bitbucket.org/galaxy/galaxy-central/issue/534/ Cut column tool messes up # header lines I'm sure the team has been busier than usual with the run up to the Galaxy Community Conference (hopefully I'll see you all tomorrow night - fingers crossed the ash from the Grimsvotn volcano doesn't cause too much trouble)... However, for future reference would it help if I emailed the list in parallel with filing bugs? None of these issues individually are overly complicated, and the sooner they get looked at the more likely it is my patches will still apply cleanly. Thanks, Peter
Dear Peter: Yes, that would help. But, you patches are definitely not unnoticed. We'll apply them (likely at the conference) and we are also in the process of devising a strategy for doing so quickly and consistently. See you on Tuesday. a. Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org On May 23, 2011, at 10:02 AM, Peter Cock wrote:
However, for future reference would it help if I emailed the list in parallel with filing bugs? None of these issues individually are overly complicated, and the sooner they get looked at the more likely it is my patches will still apply cleanly.
On Mon, May 23, 2011 at 3:09 PM, Anton Nekrutenko <anton@bx.psu.edu> wrote:
Dear Peter:
Yes, that would help.
One possibility would be to have all new bugs CC'd to the dev mailing list? Not sure if everyone here would like that or not...
But, you patches are definitely not unnoticed. We'll apply them (likely at the conference) and we are also in the process of devising a strategy for doing so quickly and consistently.
That sounds good :)
See you on Tuesday.
a.
Thanks, Peter
On Mon, May 23, 2011 at 3:34 PM, Peter Cock <p.j.a.cock@googlemail.com> wrote:
On Mon, May 23, 2011 at 3:09 PM, Anton Nekrutenko <anton@bx.psu.edu> wrote:
Dear Peter:
Yes, that would help.
One possibility would be to have all new bugs CC'd to the dev mailing list? Not sure if everyone here would like that or not...
But, you patches are definitely not unnoticed. We'll apply them (likely at the conference) ...
Kanwei has just applied the fix for issues 535 and 537, thanks! https://bitbucket.org/galaxy/galaxy-central/issue/535/ Filter data on any column tool complains about hash comment lines https://bitbucket.org/galaxy/galaxy-central/issue/537/ Filter data on any column tool casts unused columns That leaves these two pending, https://bitbucket.org/galaxy/galaxy-central/issue/534/ Cut column tool messes up # header lines https://bitbucket.org/galaxy/galaxy-central/issue/536/ Filter data on any column tools shows nonsense % vs total on stdout While I'm looking over minor bugs where I submitted a patch, the following should also be fairly quick to review: FASTQ to Tabular tool doesn't accept plain FASTQ https://bitbucket.org/galaxy/galaxy-central/issue/436/ <Conditional> does not work with scripts in different path https://bitbucket.org/galaxy/galaxy-central/issue/159/ Regards, Peter
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Anton Nekrutenko -
Peter Cock