Hi Donny, Thanks for the heads up about the broken link, I've fixed it. Other than that, are you running in to problems connecting Galaxy to your existing cluster? --nate On Tue, Jan 28, 2014 at 9:29 PM, Shrum, Donald C <DCShrum@admin.fsu.edu>wrote:

Hi all,

I could use a little basic help. I'm setting up a proof of concept galaxy server that will run in conjunction with our HPC here at FSU. Ultimately this will serve as a template where we will allow some users to run galaxy on a VM and use it as a mechanism for submitting/managing jobs on our cluster.

I've installed Galaxy on a VM that mounts our HPC file system and managed to import an ecoli .fa file.

My plan was to run bowtie2 on our HPC. https://rcc.fsu.edu/software/bowtie2

Disclaimer... I'm a sysadmin and other than compiling software my knowledge in bioinformatics is sorely lacking ;)

I'm looking at the docs here https://wiki.galaxyproject.org/Admin/Config/Performance/Cluster#PBS I get a 404 for details on Torque - http://www.clusterresources.com/pages/products/torque-resource-manager.php

Any help would be greatly appreciated. Additionally, if my intended use for Galaxy seems out of the scope of what would be useful, please let me know.

Thanks, Donny Shrum FSU Research Computing Center

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