galaxy python crash with segfault in csamtools.so when using tracks
We're getting a segfault from csamtool.so when the tracks controller is invoked: Mar 21 17:12:14 bat4 kernel: [4080861.873724] python[14319]: segfault at 45cfb1e8 ip 00007f1559865444 sp 00007f155192d1b0 error 4 in csamtools.so[7f1559837000+55000] Anyone have advice on where to start investigating? Thanks, JJ
Hi JJ, This is fixed on trunk. If you don't want to upgrade yet, you can modify eggs.ini to use the fixed eggs: pysam = 0.4.1 [tags] pysam = _kanwei_ae2bd50d9945 On Tue, Mar 22, 2011 at 4:13 PM, Jim Johnson <johns198@umn.edu> wrote:
We're getting a segfault from csamtool.so when the tracks controller is invoked:
Mar 21 17:12:14 bat4 kernel: [4080861.873724] python[14319]: segfault at 45cfb1e8 ip 00007f1559865444 sp 00007f155192d1b0 error 4 in csamtools.so[7f1559837000+55000]
Anyone have advice on where to start investigating?
Thanks,
JJ
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participants (2)
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Jim Johnson
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Kanwei Li